San Francisco Bay Bathymetry Completed
USGS research vessel Parke Snavely
Collecting bathymetry in Alviso Slough, south San Francisco Bay, in 2011
Bathymetry of a dynamic tidal estuary, such as San Francisco Bay, provides the observable linkage between anthropogenic modifications of the landscape—such as evolving land use practices, flood control, and water diversions—and natural forces of climate-driven river flow, sea level change, tides, and wind. By examining our record of hydrographic surveys, spanning over 150 years, we can gain insights into the probable effect of future modification including efforts toward restoration.
In addition to historical change analysis, current bathymetry is critical for the calibration and interpretation of hydrodynamic and ecological models. Mass balance and sheer stress are driven by bathymetry—even ecological niches are influenced by bathymetry (depth, turbidity, particle size, light, turbulence, etc.).
Here, we provide information about the bathymetric data available for San Francisco Bay.
Methods
In the example sequence shown below, the first step in the preparation of regular grids displayed on this web site begins with irregular hydrographic survey data (soundings) that have been corrected to a common datum (1).
The National Oceanic and Atmospheric Administration (NOAA) is the primary resource for obtaining these original soundings. Other agencies, including the US Army Corps of Engineers, California Department of Water Resources, US Bureau of Reclamation, and the USGS, have contributed local studies. Once the soundings are in hand they are contoured, and shoreline and marsh perimeters are added and combined into a geographic information system (GIS) (2).
All data layers must be adjusted to a common horizontal and vertical datum and all depths must have the same orientation and units. At this point a grid can be generated.
Quality control is an iterative process, performed on the resulting grid by comparing it with the original soundings (3, 4).
Errors are computed, plotted and repaired when appropriate. Errors are usually a result of incorrect unit tags on the source data or digitizing mistakes, but some are due to gradients in bathymetry that cannot be resolved by a single grid cell.
The final grid (5) can be adjusted to a different tidal datum using an adjustment grid.
This grid is produced by assigning tide levels observed at shore stations to co-tidal lines from the TRIM-2D model (6, 7).
Geostatistics
Using this 100m grid cell representation of the Bay we can compute some primary geomorphic features of the basin--such as surface area and volume--for a given tidal datum, and compare these and other statistical properties in the sub-basins of San Francisco Bay.
Full Bay
TIDAL DATUM | VOLUME (Mm3) | SURFACE AREA (Mm2) | AVG. DEPTH VOL/AREA (m) |
MEDIAN DEPTH (m) |
MLLW | 7142 | 1138 | 6.3 | 2.8 |
MSL | 8446 | 1219 | 6.9 | 3.6 |
MHHW | 9570 | 1244 | 7.7 | 4.4 |
Properties based on the Mean Sea Level grid
PROPERTY | SOUTH BAY | CENTRAL BAY | SAN PABLO BAY | SUISUN BAY |
Area (Mm2) | 426.8 | 326.3 | 273.4 | 169.6 |
Volume (Mm3) | 1971 | 4388 | 1016 | 990 |
Average depth (m) | 4.6 | 13.4 | 3.7 | 5.8 |
Median depth (m) | 3.2 | 10.9 | 2.5 | 3.6 |
% Area < 5 m |
69 | 32 | 82 | 57 |
Bathymetry Change
As described in our METHODS section, a continuous surface representation of each bathymetric survey was created using Topogrid, an Arc/Info module that utilizes sounding and contour information to create a hydrodynamically correct surface. Input data was a combination of point soundings and hand-drawn depth contours (see table below). Once a bathymetric surface has been created for each hydrographic survey, the surfaces are adjusted to a common datum and we compute change or difference grids. These new ‘change’ surfaces identify areas of erosion and deposition.
Here is an example difference map of San Pablo Bay (1856-1887). During this period there was massive sediment accumulation related to hydraulic gold mining.
The data supporting historical change analysis is quite extensive. The following tables summarize the survey dates, digitized soundings, and contours used to produce the bathymetric surfaces and difference maps for San Francisco Bay.
SUISUN BAY | ||
SURVEY YEAR | NUMBER OF SOUNDINGS | CONTOUR INTERVALS (ft) |
1867 | 18,202 | -4, 0, 6, 12, 18, 30, 60, 90 |
1887 | 21,753 | -4, 0, 6, 12, 18, 30, 60, 90 |
1922 | 17,303 | -4, 0, 6, 12, 18, 30, 60, 90 |
1942 | 36,169 | -4, 0, 6, 12, 18, 30, 60, 90 |
1990 | 93,393 | -1, 2, 5, 10, 15, 20, 25, 30, 35, 45 (meters) |
SAN PABLO BAY | ||
SURVEY YEAR | NUMBER OF SOUNDINGS | CONTOUR INTERVALS (ft) |
1856 | 4973 | 0, 2, 3, 4, 6, 12, 18, 24, 36, 42, 48, 60 |
1887 | 3679 | -1, 0, 1, 2, 3, 4, 5, 6, 7, 9, 12, 24, 30, 36, 48, 60 |
1898 | 1994 | 0, 3, 6, 12, 18, 24, 30, 36, 60 |
1922 | 42,764 | -1, 0, 1, 2, 3, 4, 5, 6, 12, 18, 30, 60 |
1951 | 62,900 | 0, 6, 12, 30, 48 |
1983 | 65,739 | 0, 6, 12, 18, 30, 36, 60 |
CENTRAL BAY | ||
SURVEY YEAR | NUMBER OF SOUNDINGS | CONTOUR INTERVALS (ft) |
1855 | 21,052 | 0, 6, 12, 18, 30, 60, 90, 120, 180, 240, 300 |
1895 | 289,282 | 0, 6, 12, 18, 30, 60, 90, 120, 180, 240, 300, 360 |
1920 | 48,116 | 0, 6, 12, 18, 30, 60, 90, 120 |
1947 | 229,551 | 0, 6, 12, 18, 30, 60, 90, 120, 180, 240, 300 |
1979 | 177,144 | 0, 6, 12, 18, 30, 60, 90, 120, 180, 240, 300, 360 |
SOUTH BAY | ||
SURVEY YEAR | NUMBER OF SOUNDINGS | CONTOUR INTERVALS (ft) |
1858 | 20,036 | 0, 3, 6, 12, 18, 24, 30, 36, 50, 60, 70 |
1898 | 99,399 | 0, 3, 6, 12, 18, 24, 30, 36, 50, 60, 70, 80 |
1931 | 92,451 | 0, 3, 6, 12, 18, 24, 30, 36, 50, 60, 70, 80 |
1956 | 100,748 | 0, 3, 6, 12, 18, 24, 30, 36, 50, 60, 70, 80 |
1983 | 136,095 | 0, 3, 6, 12, 18, 24, 30, 36, 50, 60, 70, 80 |
2005 | ~2.7 million | 0, 3, 6, 12, 18, 24, 30, 36, 50, 60, 70, 80 |
Official Publications
- San Pablo Bay Historical Analysis
USGS Open-File Report 98-759
Sedimentation and bathymetric change in San Pablo Bay, 1856-1983
- Suisun Bay Historical Analysis
USGS Open-File Report 99-563
Sedimentation and Bathymetry Changes in Suisun Bay: 1867-1990
- Central Bay Historical Analysis
USGS Open-File Report 2008-1312
Sediment Deposition, Erosion, and Bathymetric Change in Central San Francisco Bay: 1855–1979
- South Bay Historical Analysis Part 1
USGS Open-File Report 2004-1192
Deposition, Erosion, and Bathymetric Change in South San Francisco Bay: 1858-1983
- South Bay Historical Analysis Part 2
USGS Open-File Report 2006-1287
Sediment Deposition and Erosion in South San Francisco Bay, California from 1956 to 2005
Animations of change for North Bay
By linear interpolation, we can compute sedimentation maps for years between surveys and combine the maps to produce an animation of sedimentation for the North Bay. This animation gives an overall view of the system in time and space. We can see that, in the more active channels of Suisun Bay, surface sediment is deposited and erodes quickly in response to changing flows (floods/drought) and modifications (such as dredging the southern channel or long term mooring of the mothball fleet).
We assume:
- the sediment deposited in North San Francisco Bay between 1856 and 1887 was dominated by hydraulic mining debris;
- erosion observed in subsequent surveys was not re-deposited locally; and
- material deposited after 1887 was not mining debris.
Making these assumptions, we can predict the location and thickness of the original hydraulic mining debris. It is especially notable that the mercury employed in gold mining in the Sierra Nevada was refined liquid quicksilver or elemental mercury; this is a form of mercury much more likely to foster net methylation than is cinnabar, the form of mercury in most mercury mines. Approximately 10,000 tonnes of refined mercury were lost to the watershed during the Gold Rush mining era. Much of the mercury consumed by gold mining could have been incorporated into the 12 billion cubic meters of sediments extracted by the mining activities and released to the rivers of the Bay-Delta watershed. The mercury-laced hydraulic mining debris was ultimately transported to the bay-delta; it is known that large deposits of hydraulic mining debris remain in bay sediments. These wastes formed marshes, islands, or filled or diked marsh, or were deposited in shallow waters. Under the right circumstances this mercury contamination is transported through the food chain and concentrated in some commercial and sport fish. Human consumption of fish caught in the Bay is already restricted because of mercury contamination. Specifically, adults are advised to limit consumption of sport fish from the Bay to two times a month; pregnant or nursing women and children 6 or under should limit consumption to one time a month. Large shark and striped bass from the Bay should not be consumed at all. As we study the feasibility of restoration of marshes that were sinks for mining debris, the possibility of releasing mercury to the Bay must be considered.
Animations of mining debris deposition and subsequent erosion
Below are publications associated with this project.
Syntrophotalea acetylenivorans sp. nov., a diazotrophic, acetylenotrophic anaerobe isolated from intertidal sediments
Pesticide mixtures in the Sacramento–San Joaquin Delta, 2016–17: Results from year 2 of the Delta Regional Monitoring Program
Morphodynamic resilience of intertidal mudflats on a seasonal time scale
Intertidal mudflats are morphodynamic features present in many estuaries worldwide. Often located between vegetated shores and deep channels they comprise valuable ecosystems and serve to protect the hinterland by attenuating waves. Although mudflats are persistently present on yearly to decadal time scales, little is known on their morphodynamic adaptation to short‐term variations in forcing such
A revised continuous surface elevation model for modeling
Slough evolution and legacy mercury remobilization induced by wetland restoration in South San Francisco Bay
Initial dispersal (1986-1987) of the invasive foraminifera Trochammina hadai Uchio in San Francisco Bay, California, USA
A time series of three closely-spaced data sets are used to track the early expansion of the invasive Japanese benthic foraminifera Trochammina hadai in the southern portion of San Francisco Bay known as South Bay. The species initially appeared in 1983, comprising only 1.5% of the assemblage in one of four samples that were dominated by the native species Ammonia tepida and Cribroelphidium excava
Modeling morphodynamic development in the Alviso Slough system, South San Francisco Bay, California
Pesticide inputs to the Sacramento–San Joaquin Delta, 2015–16: Results from the Delta Regional Monitoring Program
How can climate change and engineered water conveyance affect sediment dynamics in the San Francisco Bay-Delta system?
Description of gravity cores from San Pablo Bay and Carquinez Strait, San Francisco Bay, California
A new seamless, high-resolution digital elevation model of the San Francisco Bay-Delta Estuary, California
Application of an unstructured 3D finite volume numerical model to flows and salinity dynamics in the San Francisco Bay-Delta
Below are partners associated with this project.
- Overview
Bathymetry of a dynamic tidal estuary, such as San Francisco Bay, provides the observable linkage between anthropogenic modifications of the landscape—such as evolving land use practices, flood control, and water diversions—and natural forces of climate-driven river flow, sea level change, tides, and wind. By examining our record of hydrographic surveys, spanning over 150 years, we can gain insights into the probable effect of future modification including efforts toward restoration.
In addition to historical change analysis, current bathymetry is critical for the calibration and interpretation of hydrodynamic and ecological models. Mass balance and sheer stress are driven by bathymetry—even ecological niches are influenced by bathymetry (depth, turbidity, particle size, light, turbulence, etc.).
Here, we provide information about the bathymetric data available for San Francisco Bay.
Methods
Sources/Usage: Public Domain. View Media DetailsIn the example sequence shown below, the first step in the preparation of regular grids displayed on this web site begins with irregular hydrographic survey data (soundings) that have been corrected to a common datum (1).
The National Oceanic and Atmospheric Administration (NOAA) is the primary resource for obtaining these original soundings. Other agencies, including the US Army Corps of Engineers, California Department of Water Resources, US Bureau of Reclamation, and the USGS, have contributed local studies. Once the soundings are in hand they are contoured, and shoreline and marsh perimeters are added and combined into a geographic information system (GIS) (2).
All data layers must be adjusted to a common horizontal and vertical datum and all depths must have the same orientation and units. At this point a grid can be generated.
Quality control is an iterative process, performed on the resulting grid by comparing it with the original soundings (3, 4).
Errors are computed, plotted and repaired when appropriate. Errors are usually a result of incorrect unit tags on the source data or digitizing mistakes, but some are due to gradients in bathymetry that cannot be resolved by a single grid cell.
The final grid (5) can be adjusted to a different tidal datum using an adjustment grid.
This grid is produced by assigning tide levels observed at shore stations to co-tidal lines from the TRIM-2D model (6, 7).
Geostatistics
Using this 100m grid cell representation of the Bay we can compute some primary geomorphic features of the basin--such as surface area and volume--for a given tidal datum, and compare these and other statistical properties in the sub-basins of San Francisco Bay.
Sources/Usage: Public Domain. View Media DetailsSources/Usage: Public Domain. View Media DetailsFull Bay
TIDAL DATUM VOLUME (Mm3) SURFACE AREA (Mm2) AVG. DEPTH
VOL/AREA (m)MEDIAN DEPTH (m) MLLW 7142 1138 6.3 2.8 MSL 8446 1219 6.9 3.6 MHHW 9570 1244 7.7 4.4 Properties based on the Mean Sea Level grid
PROPERTY SOUTH BAY CENTRAL BAY SAN PABLO BAY SUISUN BAY Area (Mm2) 426.8 326.3 273.4 169.6 Volume (Mm3) 1971 4388 1016 990 Average depth (m) 4.6 13.4 3.7 5.8 Median depth (m) 3.2 10.9 2.5 3.6 % Area
< 5 m69 32 82 57 Bathymetry Change
As described in our METHODS section, a continuous surface representation of each bathymetric survey was created using Topogrid, an Arc/Info module that utilizes sounding and contour information to create a hydrodynamically correct surface. Input data was a combination of point soundings and hand-drawn depth contours (see table below). Once a bathymetric surface has been created for each hydrographic survey, the surfaces are adjusted to a common datum and we compute change or difference grids. These new ‘change’ surfaces identify areas of erosion and deposition.
Here is an example difference map of San Pablo Bay (1856-1887). During this period there was massive sediment accumulation related to hydraulic gold mining.
The data supporting historical change analysis is quite extensive. The following tables summarize the survey dates, digitized soundings, and contours used to produce the bathymetric surfaces and difference maps for San Francisco Bay.
SUISUN BAY SURVEY YEAR NUMBER OF SOUNDINGS CONTOUR INTERVALS (ft) 1867 18,202 -4, 0, 6, 12, 18, 30, 60, 90 1887 21,753 -4, 0, 6, 12, 18, 30, 60, 90 1922 17,303 -4, 0, 6, 12, 18, 30, 60, 90 1942 36,169 -4, 0, 6, 12, 18, 30, 60, 90 1990 93,393 -1, 2, 5, 10, 15, 20, 25, 30, 35, 45 (meters) SAN PABLO BAY SURVEY YEAR NUMBER OF SOUNDINGS CONTOUR INTERVALS (ft) 1856 4973 0, 2, 3, 4, 6, 12, 18, 24, 36, 42, 48, 60 1887 3679 -1, 0, 1, 2, 3, 4, 5, 6, 7, 9, 12, 24, 30, 36, 48, 60 1898 1994 0, 3, 6, 12, 18, 24, 30, 36, 60 1922 42,764 -1, 0, 1, 2, 3, 4, 5, 6, 12, 18, 30, 60 1951 62,900 0, 6, 12, 30, 48 1983 65,739 0, 6, 12, 18, 30, 36, 60 CENTRAL BAY SURVEY YEAR NUMBER OF SOUNDINGS CONTOUR INTERVALS (ft) 1855 21,052 0, 6, 12, 18, 30, 60, 90, 120, 180, 240, 300 1895 289,282 0, 6, 12, 18, 30, 60, 90, 120, 180, 240, 300, 360 1920 48,116 0, 6, 12, 18, 30, 60, 90, 120 1947 229,551 0, 6, 12, 18, 30, 60, 90, 120, 180, 240, 300 1979 177,144 0, 6, 12, 18, 30, 60, 90, 120, 180, 240, 300, 360 SOUTH BAY SURVEY YEAR NUMBER OF SOUNDINGS CONTOUR INTERVALS (ft) 1858 20,036 0, 3, 6, 12, 18, 24, 30, 36, 50, 60, 70 1898 99,399 0, 3, 6, 12, 18, 24, 30, 36, 50, 60, 70, 80 1931 92,451 0, 3, 6, 12, 18, 24, 30, 36, 50, 60, 70, 80 1956 100,748 0, 3, 6, 12, 18, 24, 30, 36, 50, 60, 70, 80 1983 136,095 0, 3, 6, 12, 18, 24, 30, 36, 50, 60, 70, 80 2005 ~2.7 million 0, 3, 6, 12, 18, 24, 30, 36, 50, 60, 70, 80 Official Publications
- San Pablo Bay Historical Analysis
USGS Open-File Report 98-759
Sedimentation and bathymetric change in San Pablo Bay, 1856-1983
- Suisun Bay Historical Analysis
USGS Open-File Report 99-563
Sedimentation and Bathymetry Changes in Suisun Bay: 1867-1990
- Central Bay Historical Analysis
USGS Open-File Report 2008-1312
Sediment Deposition, Erosion, and Bathymetric Change in Central San Francisco Bay: 1855–1979
- South Bay Historical Analysis Part 1
USGS Open-File Report 2004-1192
Deposition, Erosion, and Bathymetric Change in South San Francisco Bay: 1858-1983
- South Bay Historical Analysis Part 2
USGS Open-File Report 2006-1287
Sediment Deposition and Erosion in South San Francisco Bay, California from 1956 to 2005
Animations of change for North Bay
Sources/Usage: Public Domain. View Media DetailsBy linear interpolation, we can compute sedimentation maps for years between surveys and combine the maps to produce an animation of sedimentation for the North Bay. This animation gives an overall view of the system in time and space. We can see that, in the more active channels of Suisun Bay, surface sediment is deposited and erodes quickly in response to changing flows (floods/drought) and modifications (such as dredging the southern channel or long term mooring of the mothball fleet).
We assume:
- the sediment deposited in North San Francisco Bay between 1856 and 1887 was dominated by hydraulic mining debris;
- erosion observed in subsequent surveys was not re-deposited locally; and
- material deposited after 1887 was not mining debris.
Making these assumptions, we can predict the location and thickness of the original hydraulic mining debris. It is especially notable that the mercury employed in gold mining in the Sierra Nevada was refined liquid quicksilver or elemental mercury; this is a form of mercury much more likely to foster net methylation than is cinnabar, the form of mercury in most mercury mines. Approximately 10,000 tonnes of refined mercury were lost to the watershed during the Gold Rush mining era. Much of the mercury consumed by gold mining could have been incorporated into the 12 billion cubic meters of sediments extracted by the mining activities and released to the rivers of the Bay-Delta watershed. The mercury-laced hydraulic mining debris was ultimately transported to the bay-delta; it is known that large deposits of hydraulic mining debris remain in bay sediments. These wastes formed marshes, islands, or filled or diked marsh, or were deposited in shallow waters. Under the right circumstances this mercury contamination is transported through the food chain and concentrated in some commercial and sport fish. Human consumption of fish caught in the Bay is already restricted because of mercury contamination. Specifically, adults are advised to limit consumption of sport fish from the Bay to two times a month; pregnant or nursing women and children 6 or under should limit consumption to one time a month. Large shark and striped bass from the Bay should not be consumed at all. As we study the feasibility of restoration of marshes that were sinks for mining debris, the possibility of releasing mercury to the Bay must be considered.
Animations of mining debris deposition and subsequent erosion
Sources/Usage: Public Domain. View Media DetailsSources/Usage: Public Domain. View Media Details - San Pablo Bay Historical Analysis
- Publications
Below are publications associated with this project.
Filter Total Items: 446Syntrophotalea acetylenivorans sp. nov., a diazotrophic, acetylenotrophic anaerobe isolated from intertidal sediments
A Gram-stain-negative, strictly anaerobic, non-motile, rod-shaped bacterium, designated SFB93T, was isolated from the intertidal sediments of South San Francisco Bay, located near Palo Alto, CA, USA. SFB93T was capable of acetylenotrophic and diazotrophic growth, grew at 22–37 °C, pH 6.3–8.5 and in the presence of 10–45 g l−1 NaCl. Phylogenetic analyses based on 16S rRNA gene sequencing showed thaAuthorsShaun Baesman, John M. Sutton, Janna L. Fierst, Denise M. Akob, Ronald S. OremlandPesticide mixtures in the Sacramento–San Joaquin Delta, 2016–17: Results from year 2 of the Delta Regional Monitoring Program
The Delta Regional Monitoring Program was developed by the Central Valley Regional Water Quality Control Board in response to the decline of pelagic fish species in the Sacramento–San Joaquin Delta that was observed in the early 2000s. The U.S. Geological Survey, in cooperation with the Delta Regional Monitoring Program, has been responsible for collecting and analyzing surface-water samples for aAuthorsMatthew D. De Parsia, Emily E. Woodward, James L. Orlando, Michelle L. HladikMorphodynamic resilience of intertidal mudflats on a seasonal time scale
Intertidal mudflats are morphodynamic features present in many estuaries worldwide. Often located between vegetated shores and deep channels they comprise valuable ecosystems and serve to protect the hinterland by attenuating waves. Although mudflats are persistently present on yearly to decadal time scales, little is known on their morphodynamic adaptation to short‐term variations in forcing such
AuthorsMick Van der Wegen, Dano Roelvink, Bruce E. JaffeA revised continuous surface elevation model for modeling
A digital elevation model (DEM) is an essential component of any hydrodynamic model. The Delta Modeling Section (Section) has maintained a database of bathymetry soundings and levee surveys for decades and published a 10-meter (10m) DEM for the San Francisco Bay and Sacramento-San Joaquin Delta (Delta) (California Department of Water Resources 2012). In collaboration with the U.S. Geological SurveAuthorsRueen-Fang Wang, Eli Ateljevich, Theresa A. Fregoso, Bruce E. JaffeSlough evolution and legacy mercury remobilization induced by wetland restoration in South San Francisco Bay
Coastal wetlands have a long history of degradation and destruction due to human development. Now recognized as one of the most productive ecosystems in the world, substantial efforts are being made to restore this critical habitat. While wetland restoration efforts are generally viewed as beneficial in terms of providing wildlife habitat and flood control, they are often accompanied by dramatic pAuthorsAmy C. Foxgrover, Mark C. Marvin-DiPasquale, Bruce E. Jaffe, Theresa A. FregosoInitial dispersal (1986-1987) of the invasive foraminifera Trochammina hadai Uchio in San Francisco Bay, California, USA
A time series of three closely-spaced data sets are used to track the early expansion of the invasive Japanese benthic foraminifera Trochammina hadai in the southern portion of San Francisco Bay known as South Bay. The species initially appeared in 1983, comprising only 1.5% of the assemblage in one of four samples that were dominated by the native species Ammonia tepida and Cribroelphidium excava
AuthorsMary McGannModeling morphodynamic development in the Alviso Slough system, South San Francisco Bay, California
Alviso Slough area, South San Francisco Bay, California, is the site of an ongoing effort to restore former salt production ponds to intertidal habitat. As restoration proceeds and the levees surrounding the former salt production ponds are breached, the increase in tidal prism and associated sediment scour in the sloughs will remobilize legacy mercury deposits. A numerical model that is able to aAuthorsMick Van der Wegen, Johan Reyes, Bruce Jaffe, Amy FoxgroverPesticide inputs to the Sacramento–San Joaquin Delta, 2015–16: Results from the Delta Regional Monitoring Program
Emergent hypotheses about causes of the pelagic organism decline in the Sacramento–San Joaquin Delta (Delta) indicate that a more complete understanding of the quality of water entering the Delta is needed. Less than half of all pesticides used in the Delta watershed are measured in samples collected for routine monitoring, and with new pesticides continually being registered for use, the concentrAuthorsMatthew D. De Parsia, James L. Orlando, Megan M. McWayne, Michelle L. HladikHow can climate change and engineered water conveyance affect sediment dynamics in the San Francisco Bay-Delta system?
Suspended sediment concentration is an important estuarine health indicator. Estuarine ecosystems rely on the maintenance of habitat conditions, which are changing due to direct human impact and climate change. This study aims to evaluate the impact of climate change relative to engineering measures on estuarine fine sediment dynamics and sediment budgets. We use the highly engineered San FranciscAuthorsFernanda Achete, Mick Van der Wegen, Jan Adriaan Roelvink, Bruce E. JaffeDescription of gravity cores from San Pablo Bay and Carquinez Strait, San Francisco Bay, California
Seventy-two gravity cores were collected by the U.S. Geological Survey in 1990, 1991, and 2000 from San Pablo Bay and Carquinez Strait, California. The gravity cores collected within San Pablo Bay contain bioturbated laminated silts and sandy clays, whole and broken bivalve shells (mostly mussels), fossil tube structures, and fine-grained plant or wood fragments. Gravity cores from the channel walAuthorsDonald L. Woodrow, John L. Chin, Florence L. Wong, Theresa A. Fregoso, Bruce E. JaffeA new seamless, high-resolution digital elevation model of the San Francisco Bay-Delta Estuary, California
Climate change, sea-level rise, and human development have contributed to the changing geomorphology of the San Francisco Bay - Delta (Bay-Delta) Estuary system. The need to predict scenarios of change led to the development of a new seamless, high-resolution digital elevation model (DEM) of the Bay – Delta that can be used by modelers attempting to understand potential future changes to the estuaAuthorsTheresa A. Fregoso, Rueen-Fang Wang, Eli Ateljevich, Bruce E. JaffeApplication of an unstructured 3D finite volume numerical model to flows and salinity dynamics in the San Francisco Bay-Delta
A linked modeling approach has been undertaken to understand the impacts of climate and infrastructure on aquatic ecology and water quality in the San Francisco Bay-Delta region. The Delft3D Flexible Mesh modeling suite is used in this effort for its 3D hydrodynamics, salinity, temperature and sediment dynamics, phytoplankton and water-quality coupling infrastructure, and linkage to a habitat suitAuthorsR.C. Martyr-Koller, H.W.J. Kernkamp, Anne A. Van Dam, Mick van der Wegen, Lisa Lucas, N. Knowles, B. Jaffe, T.A. Fregoso - Partners
Below are partners associated with this project.