TC Chamberlin Modeling Center Active
Examples of where we work
The TC Chamberlin Modeling Center works nationally and internationally. These are footprints of some of the national models run at the Center.
Both Windows® and Linux® operating systems are increasingly brought to bear as shown by increases in the CPU hours for jobs run at the Center.
The Center specializes in combining commodity hardware such as desktop PCs and blade servers to solve problems that a single computer cannot.
The TC Chamberlin Modeling Center provides one-stop access to advanced computing so no project is limited by a lack of computer power. The Center can provide hardware access, assistance with migration and implementation, and training. We also develop, test, and disseminate state-of-the-art computational and analytical techniques and tools so models can be more effectively used in decision-making.
The TC Chamberlin Modeling Center is a founding partner of the USGS Advanced Computing Cooperative (ACC). The ACC provides one-stop access to advanced computing so that no work is limited by a lack of computer power. The TC Chamberlin Modeling Center is funded in part by the Core Science Systems Mission Area of the USGS to provide access to computer hardware and assistance for moving problems from local desktops to larger systems. Depending on the needs of the modeler, assistance can include implementing powerful new computational and analytical techniques, and training others in the skills needed for future modeling projects. Within the larger ACC, the TC Chamberlin Modeling Center also develops, tests, and disseminates state-of-the-art techniques and tools so that models are more effectively applied to today’s decision-making. Use the contact information on the overview tab to start the process to move your problem to advanced computing.
Problem
Modeling has become the language of quantitative scientific problem solving. Yet increases in computing power, parallel computing, and the availability of diverse sources of data have increased the complexity of models, and training on these new capabilities has not kept pace. As a result, it has become impractical for practitioners to develop expertise in the wide-ranging aspects of parallel computing, software customization, modeling, calibration, and uncertainty analysis.
Objectives
- Provide advanced computing assistance to modelers to implement powerful new computational and analytical techniques
- Provide training to others so they can gain the skills necessary to apply to their projects in the future
- Develop, implement, and disseminate state-of-the-art techniques and tools so that models are more effectively applied to today’s decision-making
Examples of Advanced Computing
A complex natural world means that there can never be certain that a simple representation such as a model captures its important characteristics. One way to handle uncertainty is to run a model many times where each run has slightly different model input. When finished, the runs can be summarized to identify which outcomes are likely and which are not. Likewise, visualization of model results can be importing for efficiently conveying what the many hours of model runs produced. Examples of these types of advanced computing outputs are shown here.
The TC Chamberlin Modeling Center has assisted projects throughout the world, including: Alabama, Arkansas, Arizona, California, Colorado, Connecticut, Florida, Hawaii, Illinois, Iowa, Maine, Massachusetts, Michigan, Minnesota, Mississippi, Montana, Nebraska, Nevada, North Dakota, Oregon, Oklahoma, Pennsylvania, South Carolina, South Dakota, Texas, Virginia, Washington, Wisconsin, Wyoming, the Great Lakes Basin, Native American tribes, Australia, Denmark, and Canada. Past work focuses primarily on water issues but also includes a range of models - from temperature to pathogens to populations. Examples of some of this work are shown in the figures on the right, along with some of our key publications.
BOOKS:
- Anderson, M.P., Woessner, W.W. and Hunt, R.J., 2015, Applied Groundwater Modeling: Simulation of Flow and Advective Transport (2nd Edition). Academic Press, Inc. 564 p. ISBN 9780120581030.
- Jakeman, A.J., Barreteau, O., Hunt, R.J., Rinaudo, J-D., and Ross, A., (editors) 2016, Integrated Groundwater Management: Concepts, Approaches, Challenges. Springer International Publishing, Switzerland. 953 p. ISBN 978-3-319-23575-2.
GUIDELINES AND SUGGESTED PRACTICES:
- Hunt, R.J., Anderson, M.P., and Kelson, V.A., 1998, Improving a complex finite difference groundwater-flow model through the use of an analytic element screening model. Groundwater 36(6), p.1011-1017.
- Anderson, M.P., Hunt, R.J., Krohelski, J.T., and Chung, K., 2002, Using high hydraulic conductivity nodes to simulate seepage lakes. Groundwater 40(2): 119-124.
- Kelson, V.A., Hunt, R.J., and Haitjema, H.M., 2002, Improving a regional model using reduced complexity and parameter estimation. Groundwater 40(2), p. 138-149.
- Hunt, R.J., Haitjema, H.M., Krohelski, J.T., and Feinstein, D.T., 2003, Simulating ground water-lake interactions: Approaches and insights, Groundwater 41(2): 227-237.
- Feinstein, D.T., Hart, D.J., and Krohelski, J.T., 2004, The value of long-term monitoring in the development of ground-water-flow models: USGS Fact Sheet 116-03, 4 p.
- Hunt, R.J., Doherty, J., and Tonkin, M.J., 2007, Are models too simple? Arguments for increased parameterization. Groundwater 45(3): 254-263.
- Hunt, R.J., Prudic, D.E., Walker, J.F., and Anderson, M.P., 2008, Importance of unsaturated zone flow for simulating recharge in a humid climate. Groundwater 46(4):551-560.
- Fienen, M.N., Muffels, C.T., and Hunt, R.J., 2009, On constraining pilot point calibration with regularization in PEST. Groundwater 47(6): 835-844.
- Hunt, R.J., Luchette, J., Schreüder, W.A., Rumbaugh, J.O., Doherty, J., Tonkin, M.J., and Rumbaugh, D.B., 2010a, Using a Cloud to replenish parched groundwater modeling efforts. Groundwater 48(3): 360-365.
- Fienen, M.N., Doherty, J.E., Hunt, R.J., and Reeves, H.W., 2010, Using prediction uncertainty analysis to design hydrologic monitoring networks—Example applications from the Great Lakes Water Availability Pilot Project: U.S. Geological Survey Scientific Investigations Report 2010–5159, 44 p.
- Doherty, J., Fienen, M.N., and Hunt, R.J., 2010, Approaches to Highly Parameterized Inversion: Pilot-point theory, guidelines, and research directions: U.S. Geological Survey Scientific Investigations Report 2010–5168, 36 p.
- Doherty, J., and Hunt, R.J., 2010, Approaches to Highly Parameterized Inversion: A Guide to Using PEST for Groundwater-Model Calibration. U.S. Geological Survey Scientific Investigations Report 2010–5169, 59 p.
- Doherty, J., Hunt, R.J., and Tonkin, M.J., 2010, Approaches to Highly Parameterized Inversion: A Guide to Using PEST for Model-Parameter and Predictive-Uncertainty Analysis. U.S. Geological Survey Scientific Investigations Report 2010–5211, 71 p.
- Barnett, B., Townley, L.R., Post, V., Evans, R.E., Hunt, R.J., Peeters, L., Richardson, S., Werner, A.D., Knapton, A. and Boronkay, A., 2012, Australian Groundwater Modelling Guidelines. Waterlines Report Series No. 82, National Water Commission, Canberra, Australia. 191 p. ISBN: 978-1-921853-91-3.
- Hunt, R.J., 2012, Uncertainty, pp. 92-105 in Australian Groundwater Modelling Guidelines. Waterlines Report Series No. 82, National Water Commission, Canberra, Australia. 191 p. ISBN: 978-1-921853-91-3.
- Fienen, M.N., and Hunt, R.J., 2015, High-Throughput Computing vs. High-Performance Computing for groundwater applications. Groundwater 53(2), p. 180-184. http://dx.doi.org/10.1111/gwat.12320.
- Hunt, R.J., 2017, Applied uncertainty. Groundwater 55(6), p. 771-772. http://dx.doi.org/10.1111/gwat.12604
- Erickson, R.A., Fienen, M.N., McCalla, S.G., Weiser, E.L., Bower, M.L., Knudson, J.M., and Thain, G., 2018, Wrangling distributed computing for high-throughput environmental science: An introduction to HTCondor. PLOS Computational Biology 14(10): e1006468. https://doi.org/10.1371/journal.pcbi.1006468
SOFTWARE DEVELOPED:
- Doherty, J., and Hunt, R.J., 2009, Two statistics for evaluating parameter identifiability and error reduction. Journal of Hydrology 366: 119-127.
- Westenbroek, S.M., Kelson, V.A., Dripps, W.R., Hunt, R.J., and Bradbury, K.R., 2010, SWB—A modified Thornthwaite-Mather Soil-Water-Balance code for estimating groundwater recharge: U.S. Geological Survey Techniques and Methods 6–A31, 60 p.
- Fienen, M.N., Kunicki, T.C., and Kester, D.E., 2011, cloudPEST – A python module for cloud-computing deployment of PEST, a program for parameter estimation. U.S. Geological Survey Open-File Report 2011-1062, 22 p.
- Westenbroek, S.M., Doherty, J.E., Walker, J.F., Kelson, V.A., Hunt, R.J., and Cera, T.B., 2012, Approaches in Highly Parameterized Inversion: TSPROC, A General Time-Series Processor to Assist in Model Calibration and Result Summarization. U.S. Geological Survey Techniques and Methods, Book 7, Section C7, 73 p.
- Welter, D.E., Doherty, J.E., Hunt, R.J., Muffels, C.T., Tonkin, M.J., and Schreüder, W.A., 2012, Approaches in Highly Parameterized Inversion: PEST++, A Parameter ESTimation Code Optimized For Large Environmental Models. U.S. Geological Survey Techniques and Methods, Book 7, Section C5, 47 p.
- Muffels, C.T., Schreüder, W.A., Doherty, J.E., Karanovic, M., Tonkin, M.J., Hunt, R.J., and Welter, D.E., 2012, Approaches in Highly Parameterized Inversion: GENIE, A General Model-Independent TCP/IP Run Manager. U.S. Geological Survey Techniques and Methods, Book 7, Section C6, 26 p.
- Karanovic, M., Muffels, C.T., Tonkin, M.J., and Hunt, R.J., 2012, Approaches in Highly Parameterized Inversion: PESTCommander, A Graphical User Interface for File and Run Management Across Networks. U.S. Geological Survey Techniques and Methods, Book 7, Section C8, 9 p.
- Fienen, M.N., D’Oria, Marco, Doherty, J.E., and Hunt, R.J., 2013, Approaches in highly parameterized inversion: bgaPEST, a Bayesian geostatistical approach implementation with PEST—Documentation and instructions: U.S. Geological Survey Techniques and Methods, Book 7, Section C9, 86 p.
- Welter, D.E., White, J.T., Hunt, R.J., and Doherty, J.E. , 2015, Approaches in highly parameterized inversion—PEST++ Version 3, a Parameter ESTimation and uncertainty analysis software suite optimized for large environmental models: U.S. Geological Survey Techniques and Methods, Book 7, Section C12, 54 p.
- Muffels, C.T., Hayes, D.A., Tonkin, M.J., and Hunt, R.J., 2015, GENIE Version 2 – A General Model-Independent TCP/IP Run: pp. 24-37 in Welter, D.E., White, J.T., Hunt, R.J., and Doherty, J.E., 2015, Approaches in highly parameterized inversion—PEST++ Version 3, a Parameter ESTimation and uncertainty analysis software suite optimized for large environmental models: U.S. Geological Survey Techniques and Methods, Book 7, Section C12, 54 p.
- White, J.T., Fienen, M.N., and Doherty, J.E., 2016, A python framework for environmental model uncertainty analysis. Environmental Modelling and Software 85, p. 217-228. http://dx.doi.org/10.1016/j.envsoft.2016.08.017
- White, J. T., Fienen, M. N., Barlow, P. M., and Welter, D.E., 2017, A tool for efficient, model-independent management optimization under uncertainty. Environmental Modeling and Software. http://dx.doi.org/10.1016/j.envsoft.2017.11.019
- Westenbroek, S.M., Engott, J.A., Kelson, V.A., and Hunt, R.J., 2018, SWB Version 2.0—A soil-water-balance code for estimating net infiltration and other water-budget components: U.S. Geological Survey Techniques and Methods, book 6, chap. A59, 118 p., https://doi.org/10.3133/tm6A59
Below are publications associated with the TC Chamberlin Modeling Center.
SWB Version 2.0—A soil-water-balance code for estimating net infiltration and other water-budget components
Estimation of the groundwater resources of the bedrock aquifers at the Kettle Moraine Springs State Fish Hatchery, Sheboygan County, Wisconsin
Ice duration drives winter nitrate accumulation in north temperate lakes
The 2016 groundwater flow model for Dane County, Wisconsin
FishVis, A regional decision support tool for identifying vulnerabilities of riverine habitat and fishes to climate change in the Great Lakes Region
HESS Opinions: Repeatable research: what hydrologistscan learn from the Duke cancer research scandal
A python framework for environmental model uncertainty analysis
Assessment of groundwater availability in the Northern Atlantic Coastal Plain aquifer system From Long Island, New York, to North Carolina
Documentation of a groundwater flow model developed to assess groundwater availability in the Northern Atlantic Coastal Plain aquifer system from Long Island, New York, to North Carolina
Methods for exploring uncertainty in groundwater management predictions
Simulation of climate change effects on streamflow, groundwater, and stream temperature using GSFLOW and SNTEMP in the Black Earth Creek Watershed, Wisconsin
Potential effects of sea-level rise on the depth to saturated sediments of the Sagamore and Monomoy flow lenses on Cape Cod, Massachusetts
Below are data or web applications associated with the TC Chamberlin Modeling Center.
FishVis Mapper
The FishVis Mapper is the product of an Upper Midwest and Great Lakes LCC project, “A Regional Decision Support Tool for Identifying Vulnerabilities of Riverine Habitat and Fishes to Climate Change” that developed an approach for predicting fish species occurrence under current climate conditions and project how fish species occurrence may change under future climate conditions.
Below are partners associated with the TC Chamberlin Modeling Center.
- Overview
The TC Chamberlin Modeling Center provides one-stop access to advanced computing so no project is limited by a lack of computer power. The Center can provide hardware access, assistance with migration and implementation, and training. We also develop, test, and disseminate state-of-the-art computational and analytical techniques and tools so models can be more effectively used in decision-making.
The TC Chamberlin Modeling Center is a founding partner of the USGS Advanced Computing Cooperative (ACC). The ACC provides one-stop access to advanced computing so that no work is limited by a lack of computer power. The TC Chamberlin Modeling Center is funded in part by the Core Science Systems Mission Area of the USGS to provide access to computer hardware and assistance for moving problems from local desktops to larger systems. Depending on the needs of the modeler, assistance can include implementing powerful new computational and analytical techniques, and training others in the skills needed for future modeling projects. Within the larger ACC, the TC Chamberlin Modeling Center also develops, tests, and disseminates state-of-the-art techniques and tools so that models are more effectively applied to today’s decision-making. Use the contact information on the overview tab to start the process to move your problem to advanced computing.
Problem
Modeling has become the language of quantitative scientific problem solving. Yet increases in computing power, parallel computing, and the availability of diverse sources of data have increased the complexity of models, and training on these new capabilities has not kept pace. As a result, it has become impractical for practitioners to develop expertise in the wide-ranging aspects of parallel computing, software customization, modeling, calibration, and uncertainty analysis.Objectives
- Provide advanced computing assistance to modelers to implement powerful new computational and analytical techniques
- Provide training to others so they can gain the skills necessary to apply to their projects in the future
- Develop, implement, and disseminate state-of-the-art techniques and tools so that models are more effectively applied to today’s decision-making
Examples of Advanced Computing
A complex natural world means that there can never be certain that a simple representation such as a model captures its important characteristics. One way to handle uncertainty is to run a model many times where each run has slightly different model input. When finished, the runs can be summarized to identify which outcomes are likely and which are not. Likewise, visualization of model results can be importing for efficiently conveying what the many hours of model runs produced. Examples of these types of advanced computing outputs are shown here.
The TC Chamberlin Modeling Center has assisted projects throughout the world, including: Alabama, Arkansas, Arizona, California, Colorado, Connecticut, Florida, Hawaii, Illinois, Iowa, Maine, Massachusetts, Michigan, Minnesota, Mississippi, Montana, Nebraska, Nevada, North Dakota, Oregon, Oklahoma, Pennsylvania, South Carolina, South Dakota, Texas, Virginia, Washington, Wisconsin, Wyoming, the Great Lakes Basin, Native American tribes, Australia, Denmark, and Canada. Past work focuses primarily on water issues but also includes a range of models - from temperature to pathogens to populations. Examples of some of this work are shown in the figures on the right, along with some of our key publications.
BOOKS:
- Anderson, M.P., Woessner, W.W. and Hunt, R.J., 2015, Applied Groundwater Modeling: Simulation of Flow and Advective Transport (2nd Edition). Academic Press, Inc. 564 p. ISBN 9780120581030.
- Jakeman, A.J., Barreteau, O., Hunt, R.J., Rinaudo, J-D., and Ross, A., (editors) 2016, Integrated Groundwater Management: Concepts, Approaches, Challenges. Springer International Publishing, Switzerland. 953 p. ISBN 978-3-319-23575-2.
GUIDELINES AND SUGGESTED PRACTICES:
- Hunt, R.J., Anderson, M.P., and Kelson, V.A., 1998, Improving a complex finite difference groundwater-flow model through the use of an analytic element screening model. Groundwater 36(6), p.1011-1017.
- Anderson, M.P., Hunt, R.J., Krohelski, J.T., and Chung, K., 2002, Using high hydraulic conductivity nodes to simulate seepage lakes. Groundwater 40(2): 119-124.
- Kelson, V.A., Hunt, R.J., and Haitjema, H.M., 2002, Improving a regional model using reduced complexity and parameter estimation. Groundwater 40(2), p. 138-149.
- Hunt, R.J., Haitjema, H.M., Krohelski, J.T., and Feinstein, D.T., 2003, Simulating ground water-lake interactions: Approaches and insights, Groundwater 41(2): 227-237.
- Feinstein, D.T., Hart, D.J., and Krohelski, J.T., 2004, The value of long-term monitoring in the development of ground-water-flow models: USGS Fact Sheet 116-03, 4 p.
- Hunt, R.J., Doherty, J., and Tonkin, M.J., 2007, Are models too simple? Arguments for increased parameterization. Groundwater 45(3): 254-263.
- Hunt, R.J., Prudic, D.E., Walker, J.F., and Anderson, M.P., 2008, Importance of unsaturated zone flow for simulating recharge in a humid climate. Groundwater 46(4):551-560.
- Fienen, M.N., Muffels, C.T., and Hunt, R.J., 2009, On constraining pilot point calibration with regularization in PEST. Groundwater 47(6): 835-844.
- Hunt, R.J., Luchette, J., Schreüder, W.A., Rumbaugh, J.O., Doherty, J., Tonkin, M.J., and Rumbaugh, D.B., 2010a, Using a Cloud to replenish parched groundwater modeling efforts. Groundwater 48(3): 360-365.
- Fienen, M.N., Doherty, J.E., Hunt, R.J., and Reeves, H.W., 2010, Using prediction uncertainty analysis to design hydrologic monitoring networks—Example applications from the Great Lakes Water Availability Pilot Project: U.S. Geological Survey Scientific Investigations Report 2010–5159, 44 p.
- Doherty, J., Fienen, M.N., and Hunt, R.J., 2010, Approaches to Highly Parameterized Inversion: Pilot-point theory, guidelines, and research directions: U.S. Geological Survey Scientific Investigations Report 2010–5168, 36 p.
- Doherty, J., and Hunt, R.J., 2010, Approaches to Highly Parameterized Inversion: A Guide to Using PEST for Groundwater-Model Calibration. U.S. Geological Survey Scientific Investigations Report 2010–5169, 59 p.
- Doherty, J., Hunt, R.J., and Tonkin, M.J., 2010, Approaches to Highly Parameterized Inversion: A Guide to Using PEST for Model-Parameter and Predictive-Uncertainty Analysis. U.S. Geological Survey Scientific Investigations Report 2010–5211, 71 p.
- Barnett, B., Townley, L.R., Post, V., Evans, R.E., Hunt, R.J., Peeters, L., Richardson, S., Werner, A.D., Knapton, A. and Boronkay, A., 2012, Australian Groundwater Modelling Guidelines. Waterlines Report Series No. 82, National Water Commission, Canberra, Australia. 191 p. ISBN: 978-1-921853-91-3.
- Hunt, R.J., 2012, Uncertainty, pp. 92-105 in Australian Groundwater Modelling Guidelines. Waterlines Report Series No. 82, National Water Commission, Canberra, Australia. 191 p. ISBN: 978-1-921853-91-3.
- Fienen, M.N., and Hunt, R.J., 2015, High-Throughput Computing vs. High-Performance Computing for groundwater applications. Groundwater 53(2), p. 180-184. http://dx.doi.org/10.1111/gwat.12320.
- Hunt, R.J., 2017, Applied uncertainty. Groundwater 55(6), p. 771-772. http://dx.doi.org/10.1111/gwat.12604
- Erickson, R.A., Fienen, M.N., McCalla, S.G., Weiser, E.L., Bower, M.L., Knudson, J.M., and Thain, G., 2018, Wrangling distributed computing for high-throughput environmental science: An introduction to HTCondor. PLOS Computational Biology 14(10): e1006468. https://doi.org/10.1371/journal.pcbi.1006468
SOFTWARE DEVELOPED:
- Doherty, J., and Hunt, R.J., 2009, Two statistics for evaluating parameter identifiability and error reduction. Journal of Hydrology 366: 119-127.
- Westenbroek, S.M., Kelson, V.A., Dripps, W.R., Hunt, R.J., and Bradbury, K.R., 2010, SWB—A modified Thornthwaite-Mather Soil-Water-Balance code for estimating groundwater recharge: U.S. Geological Survey Techniques and Methods 6–A31, 60 p.
- Fienen, M.N., Kunicki, T.C., and Kester, D.E., 2011, cloudPEST – A python module for cloud-computing deployment of PEST, a program for parameter estimation. U.S. Geological Survey Open-File Report 2011-1062, 22 p.
- Westenbroek, S.M., Doherty, J.E., Walker, J.F., Kelson, V.A., Hunt, R.J., and Cera, T.B., 2012, Approaches in Highly Parameterized Inversion: TSPROC, A General Time-Series Processor to Assist in Model Calibration and Result Summarization. U.S. Geological Survey Techniques and Methods, Book 7, Section C7, 73 p.
- Welter, D.E., Doherty, J.E., Hunt, R.J., Muffels, C.T., Tonkin, M.J., and Schreüder, W.A., 2012, Approaches in Highly Parameterized Inversion: PEST++, A Parameter ESTimation Code Optimized For Large Environmental Models. U.S. Geological Survey Techniques and Methods, Book 7, Section C5, 47 p.
- Muffels, C.T., Schreüder, W.A., Doherty, J.E., Karanovic, M., Tonkin, M.J., Hunt, R.J., and Welter, D.E., 2012, Approaches in Highly Parameterized Inversion: GENIE, A General Model-Independent TCP/IP Run Manager. U.S. Geological Survey Techniques and Methods, Book 7, Section C6, 26 p.
- Karanovic, M., Muffels, C.T., Tonkin, M.J., and Hunt, R.J., 2012, Approaches in Highly Parameterized Inversion: PESTCommander, A Graphical User Interface for File and Run Management Across Networks. U.S. Geological Survey Techniques and Methods, Book 7, Section C8, 9 p.
- Fienen, M.N., D’Oria, Marco, Doherty, J.E., and Hunt, R.J., 2013, Approaches in highly parameterized inversion: bgaPEST, a Bayesian geostatistical approach implementation with PEST—Documentation and instructions: U.S. Geological Survey Techniques and Methods, Book 7, Section C9, 86 p.
- Welter, D.E., White, J.T., Hunt, R.J., and Doherty, J.E. , 2015, Approaches in highly parameterized inversion—PEST++ Version 3, a Parameter ESTimation and uncertainty analysis software suite optimized for large environmental models: U.S. Geological Survey Techniques and Methods, Book 7, Section C12, 54 p.
- Muffels, C.T., Hayes, D.A., Tonkin, M.J., and Hunt, R.J., 2015, GENIE Version 2 – A General Model-Independent TCP/IP Run: pp. 24-37 in Welter, D.E., White, J.T., Hunt, R.J., and Doherty, J.E., 2015, Approaches in highly parameterized inversion—PEST++ Version 3, a Parameter ESTimation and uncertainty analysis software suite optimized for large environmental models: U.S. Geological Survey Techniques and Methods, Book 7, Section C12, 54 p.
- White, J.T., Fienen, M.N., and Doherty, J.E., 2016, A python framework for environmental model uncertainty analysis. Environmental Modelling and Software 85, p. 217-228. http://dx.doi.org/10.1016/j.envsoft.2016.08.017
- White, J. T., Fienen, M. N., Barlow, P. M., and Welter, D.E., 2017, A tool for efficient, model-independent management optimization under uncertainty. Environmental Modeling and Software. http://dx.doi.org/10.1016/j.envsoft.2017.11.019
- Westenbroek, S.M., Engott, J.A., Kelson, V.A., and Hunt, R.J., 2018, SWB Version 2.0—A soil-water-balance code for estimating net infiltration and other water-budget components: U.S. Geological Survey Techniques and Methods, book 6, chap. A59, 118 p., https://doi.org/10.3133/tm6A59
- Publications
Below are publications associated with the TC Chamberlin Modeling Center.
Filter Total Items: 115SWB Version 2.0—A soil-water-balance code for estimating net infiltration and other water-budget components
The U.S. Geological Survey’s Soil-Water-Balance (SWB) code was developed as a tool to estimate distribution and timing of net infiltration out of the root zone by means of an approach that uses readily available data and minimizes user effort required to begin a SWB application. SWB calculates other components of the water balance, including soil moisture, reference and actual evapotranspiration,AuthorsStephen M. Westenbroek, John A. Engott, Victor A. Kelson, Randall J. HuntEstimation of the groundwater resources of the bedrock aquifers at the Kettle Moraine Springs State Fish Hatchery, Sheboygan County, Wisconsin
Groundwater resources information was needed to understand regional aquifer systems and water available to wells and springs for rearing important Lake Michigan fish species at the Kettle Moraine Springs State Fish Hatchery in Sheboygan County, Wisconsin. As a basis for estimating the groundwater resources available, an existing groundwater-flow model was refined, and new groundwater-flow models wAuthorsCharles Dunning, Daniel T. Feinstein, Cheryl A. Buchwald, Randall J. Hunt, Megan J. HaserodtIce duration drives winter nitrate accumulation in north temperate lakes
The duration of winter ice cover on lakes varies substantially with climate variability, and has decreased over the last several decades in many temperate lakes. However, little is known of how changes in seasonal ice cover may affect biogeochemical processes under ice. We examined winter nitrogen (N) dynamics under ice using a 30+ yr dataset from five oligotrophic/mesotrophic north temperate lakeAuthorsSteven M Powers, Stephanie G. Labou, Helen M. Baulch, Randall J. Hunt, Noah R. Lottig, Stephanie E. Hampton, Emily H. StanleyThe 2016 groundwater flow model for Dane County, Wisconsin
A new groundwater flow model for Dane County, Wisconsin, replaces an earlier model developed in the 1990s by the Wisconsin Geological and Natural History Survey (WGNHS) and the U.S. Geological Survey (USGS). This modeling study was conducted cooperatively by the WGNHS and the USGS with funding from the Capital Area Regional Planning Commission (CARPC). Although the overall conceptual model of theAuthorsMichael J. Parsen, Kenneth R. Bradbury, Randall J. Hunt, Daniel T. FeinsteinFishVis, A regional decision support tool for identifying vulnerabilities of riverine habitat and fishes to climate change in the Great Lakes Region
Climate change is expected to alter the distributions and community composition of stream fishes in the Great Lakes region in the 21st century, in part as a result of altered hydrological systems (stream temperature, streamflow, and habitat). Resource managers need information and tools to understand where fish species and stream habitats are expected to change under future conditions. Fish sampleAuthorsJana S. Stewart, S. Alex Covert, Nick J. Estes, Stephen M. Westenbroek, Damon Krueger, Daniel J. Wieferich, Michael T. Slattery, John D. Lyons, James E. McKenna, Dana M. Infante, Jennifer L. BruceHESS Opinions: Repeatable research: what hydrologistscan learn from the Duke cancer research scandal
In the past decade, difficulties encountered in reproducing the results of a cancer study at Duke University resulted in a scandal and an investigation which concluded that tools used for data management, analysis, and modeling were inappropriate for the documentation of the study, let alone the reproduction of the results. New protocols were developed which require that data analysis and modelingAuthorsMichael Fienen, Mark BakkerA python framework for environmental model uncertainty analysis
We have developed pyEMU, a python framework for Environmental Modeling Uncertainty analyses, open-source tool that is non-intrusive, easy-to-use, computationally efficient, and scalable to highly-parameterized inverse problems. The framework implements several types of linear (first-order, second-moment (FOSM)) and non-linear uncertainty analyses. The FOSM-based analyses can also be completed prioAuthorsJeremy T. White, Michael N. Fienen, John E. DohertyAssessment of groundwater availability in the Northern Atlantic Coastal Plain aquifer system From Long Island, New York, to North Carolina
Executive SummaryThe U.S. Geological Survey began a multiyear regional assessment of groundwater availability in the Northern Atlantic Coastal Plain (NACP) aquifer system in 2010 as part of its ongoing regional assessments of groundwater availability of the principal aquifers of the Nation. The goals of this national assessment are to document effects of human activities on water levels and groundAuthorsJohn P. Masterson, Jason P. Pope, Michael N. Fienen, Jack Monti, Jr., Mark R. Nardi, Jason S. FinkelsteinDocumentation of a groundwater flow model developed to assess groundwater availability in the Northern Atlantic Coastal Plain aquifer system from Long Island, New York, to North Carolina
The U.S. Geological Survey developed a groundwater flow model for the Northern Atlantic Coastal Plain aquifer system from Long Island, New York, to northeastern North Carolina as part of a detailed assessment of the groundwater availability of the area and included an evaluation of how these resources have changed over time from stresses related to human uses and climate trends. The assessment wasAuthorsJohn P. Masterson, Jason P. Pope, Michael N. Fienen, Jack Monti, Jr., Mark R. Nardi, Jason S. FinkelsteinMethods for exploring uncertainty in groundwater management predictions
Models of groundwater systems help to integrate knowledge about the natural and human system covering different spatial and temporal scales, often from multiple disciplines, in order to address a range of issues of concern to various stakeholders. A model is simply a tool to express what we think we know. Uncertainty, due to lack of knowledge or natural variability, means that there are always altAuthorsJoseph H. A. Guillaume, Randall J. Hunt, Alessandro Comunian, Baihua Fu, Rachel S BlakersSimulation of climate change effects on streamflow, groundwater, and stream temperature using GSFLOW and SNTEMP in the Black Earth Creek Watershed, Wisconsin
A groundwater/surface-water model was constructed and calibrated for the Black Earth Creek watershed in south-central Wisconsin. The model was then run to simulate scenarios representing common societal concerns in the basin, focusing on maintaining a cold-water resource in an urbanizing fringe near its upper stream reaches and minimizing downstream flooding. Although groundwater and surface waterAuthorsRandall J. Hunt, Stephen M. Westenbroek, John F. Walker, William R. Selbig, R. Steven Regan, Andrew T. Leaf, David A. SaadPotential effects of sea-level rise on the depth to saturated sediments of the Sagamore and Monomoy flow lenses on Cape Cod, Massachusetts
In 2014, the U.S. Geological Survey, in cooperation with the Association to Preserve Cape Cod, the Cape Cod Commission, and the Massachusetts Environmental Trust, began an evaluation of the potential effects of sea-level rise on water table altitudes and depths to water on central and western Cape Cod, Massachusetts. Increases in atmospheric and oceanic temperatures arising, in part, from the releAuthorsDonald A. Walter, Timothy D. McCobb, John P. Masterson, Michael N. Fienen - Web Tools
Below are data or web applications associated with the TC Chamberlin Modeling Center.
FishVis Mapper
The FishVis Mapper is the product of an Upper Midwest and Great Lakes LCC project, “A Regional Decision Support Tool for Identifying Vulnerabilities of Riverine Habitat and Fishes to Climate Change” that developed an approach for predicting fish species occurrence under current climate conditions and project how fish species occurrence may change under future climate conditions.
- Partners
Below are partners associated with the TC Chamberlin Modeling Center.