Publications

Rapid and accelerating warming of salmon habitat has the potential to lower productivity of Pacific salmon (Oncorhynchus species) populations. Heat stress biomarkers can indicate where warming is most likely affecting fish populations; however, we often lack clear classifications that separate individuals with and without heat stress needed to make these tools operational. We conducted a heat expo

Urosaurus nigricaudus is a phrynosomatid lizard endemic to the Baja California Peninsula in Mexico. This work presents a chromosome-level genome assembly and annotation from a male individual. We used PacBio long reads and HiRise scaffolding to generate a high-quality genomic assembly of 1.87 Gb distributed in 327 scaffolds, with an N50 of 279 Mb and an L50 of 3. Approximately 98.4% of the genome

Populations of the threatened desert tortoise (Gopherus agassizii) continue to decline throughout the geographic range, in part because of degraded and fragmented habitats in the Mojave and western Sonoran deserts. The species is herbivorous and highly selective in choice of plant species. To increase options for recovery, we analyzed behaviors, patterns of movements while foraging, and parts of p

Mathematical biology is a wide field of study with many venues that undergraduate students can access through research. However, the topics of study for these students can be overwhelming, and many topics of study yield either only trivial results or abstract outcomes that are nonintuitive and diffcult to understand. We have used natural resource modeling, and more specifically, a partnership betw

Haleakalā National Park and montane areas on east Maui, Hawaiian Archipelago, support critical nesting habitat for endangered ‘ua‘u Hawaiian petrel Pterodroma sandwichensis. Habitat loss, non-native predators, and damage by feral ungulates are limiting factors for ground-nesting petrels at Haleakalā and throughout Hawai‘i. Because nesting habitats differ among the Hawaiian Islands, habitat distrib

Tidal marshes build elevations by below- and aboveground organic and mineral soil processes. Marsh elevation and accretion data can be used to determine if marshes are keeping pace with sea-level rise. Using a network of 54 deep rod surface elevation tables with paired feldspar marker horizon plots, we tracked elevation and accretion trends across 16 marshes in California, USA. All sites had overa

Understanding the drivers of variability in plant diversity from local to landscape spatial scales is a challenge in ecological systems. Environmental gradients exist at several spatial scales and can be nested hierarchically, influencing patterns of plant diversity in complex ways. As plant community dynamics influence ecosystem function, understanding the drivers of plant community variability a

Recent climate change should result in expansion of species to northern or high elevation range margins, and contraction at southern and low elevation margins in the northern hemisphere, because of local extirpations or range shifts or both. We combined museum occurrence records from both the continental U.S. and Mexico with a new eco-physiological model of extinction developed for lizard families

Differences in sediment biogeochemistry among tidal marsh features with different hydrological and geomorphological characteristics, including marsh interiors, marsh edges, first-order channels, and third-order channels, can result in spatial variation in MeHg production and availability. To better understand the link between MeHg production in sediments and bioaccumulation in primary and secondar

Forest die-backs linked to extreme droughts are expected to increase as the climate dries and warms. An example is the 2012-2016 hotter drought in California that induced widespread tree mortality in the Sierra Nevada, California. The sudden increase in snags (i.e., standing dead trees) raised immediate concerns about their impact on wildfire hazard and longer-term questions about their impact on

Over 4,400 large-scale solar photovoltaic (LSPV) facilities operate in the United States as of December 2021, representing more than 60 gigawatts of electric energy capacity. Of these, over 3,900 are ground-mounted LSPV facilities with capacities of 1 MWdc or more. Ground mounted LSPV installations continue increasing, with more than 400 projects appearing online in 2021 alone; however, a comprehe

Executive SummaryFrom 2014 to 2020, a Monitoring Avian Productivity and Survivorship (MAPS) banding station (station) was operated at the Naval Outlying Landing Field (NOLF), Imperial Beach, in southwestern San Diego County, California. The station was established as part of a long-term monitoring program of Neotropical migratory bird populations on NOLF and helps Naval Base Coronado (NOLF is a co