DISCOVRE: Diversity, Systematics and Connectivity of Vulnerable Reef Ecosystems Active
June is Oceans Month!
USGS is paving the way for exploration and scientific discovery in the largest ecosystem on our planet: the deep sea.
DEEP SEARCH: The Final Leg
USGS scientists mapped and collected data from deep-sea environments off the U.S. Southeastern coast
Deep-Sea EXPRESS
USGS scientists join multi-agency expedition to study deep-sea reefs and associated habitats off the U.S. West Coast
Deep Sea Discovery
USGS joins partners in discovery of 85-mile-long coral reef off the coast of South Carolina
DISCOVRE (DIversity, Systematics and COnnectivity of Vulnerable Reef Ecosystems) is an integrated, multidisciplinary, international effort investigating the unique and fragile deep-sea coral environments from the microscopic level to the ecosystem level.
Deep-Sea Coral Resources
Check out the links below for more information on deep-sea corals.
The Deep Sea
The deep sea refers to anything below 200 m depth in the ocean; beyond this depth, little to no sunlight reaches, temperatures drop, and pressure increases. Yet, life persists. Diverse environments, such as trenches, canyons, volcanoes, and seamounts, scattered over the seafloor are home to a diversity of fishes, crustaceans, anemones, sea stars, and corals.
Deep-sea corals are as colorful and diverse as their shallow-water counterparts, however, because of the lack of sunlight, deepwater corals obtain energy by using their tentacles to capture prey rather than through photosynthesis. Deep-sea coral reefs provide food and shelter for marine life, including commercially and recreationally important species, and play a critical role in the aquatic food web.
To better understand these little explored yet vital deep-sea coral reef ecosystems, USGS scientists from around the Nation contribute their expertise to the DISCOVRE effort. The multi-disciplinary approach examines components of microbiology, population genetics, paleoecology, food webs, taxonomy, community ecology, physical oceanography, seafloor characteristics, and submarine hazards. DISCOVRE relies on a network of partners from around the country and world, including the Bureau of Ocean Energy Management, National Oceanic and Atmospheric Administration (NOAA), and academic institutions. Using innovative tools and technologies, USGS scientists implement a multi-faceted research program that weaves together expertise in a variety of disciplines to investigate deepwater reefs.
Benthic Ecology
Benthic ecology is the term scientists use to describe the study of the animals living in or on the bottom of a water body. As part of the DISCOVRE project, the Benthic Ecology Group conducts research to understand community structure, biodiversity, trophic structure, and habitat connectivity of marine benthic ecosystems. The work involves examining the animals living in and on the seafloor in a variety of natural and artificial marine habitats:
- deep-sea and shallow-water corals,
- chemosynthetic seeps,
- shipwrecks,
- marine canyons, and
- wetland communities.
Marine Geology and Geophysics
Geology and geophysics refer to the study of physical structure and associated processes occurring on the planet. The USGS marine geology and geophysics team maps seafloor morphology and images the shallow sub-seafloor structure of the canyons, plateaus, and other components of the deep-sea landscape to better understand the processes that form and shape these features. Sampling sediment and rocks allows scientists to ground truth geophysical and visual observations, while providing valuable information about the composition and age of these underwater geologic environments.
Microbial Ecology
Microbial ecology is the study of microbes (bacteria, archaea, fungi, viruses), how they interact with each other, their host (if they are living on/in a plant or animal), and their environment.
Microbes are responsible for important ecosystem services, including biogeochemical cycling, nutrient availability, and structuring ecosystems by providing settlement cues to some invertebrates. Microbial associates have been shown to be key players in coral biology, serving functions such as fixing nitrogen, chelating iron, cycling waste products, and producing antibiotics to keep unwanted microbes from infecting the coral.
USGS identifies, characterizes, and enumerates environmental microbial communities, which are critical components of healthy marine ecosystems such as coral reefs, chemosynthetic seeps, and submarine canyons, with focus on coral microbiomes (both shallow and deep-sea), ecosystem metagenomics, and biodiversity.
Characterizing the microbial communities associated with deep-sea corals in these environments will increase the knowledge of the biodiversity in these ecosystems and provide insight into the variability or uniqueness of the corals between deep-sea environments.
Paleoclimatology
Paleoclimatology is the study of past climates using evidence found in a variety of the Earth's surfaces. USGS scientists are using long-lived black corals as archives to determine the climate and ocean chemistry over hundreds to thousands of years. Deep-sea corals are extremely useful in determining past climates, and recent developments in coral sampling techniques, as well as the ability to study corals in a wide variety of geographic areas, has increased the value of using deep-sea corals for climate change studies. Coral skeletons have rings, similar to trees, that help scientists determine environmental cycles and ocean variability.
Population Genetics
Population genetics is the study of genetic variation within and between populations. Understanding how the biodiversity of corals and other invertebrates is distributed throughout the deep-sea environment can help guide management of sensitive species, especially in areas of interest to oil and gas exploration. USGS uses genetic tools to characterize biodiversity and local and regional patterns of genetic connectivity among deep-sea coral habitats.
For more information:
CSA Ocean Sciences Inc. Ross S, Brooke S, Baird E, Coykendall E, Davies A, Demopoulos A, France S, Kellogg C, Mather R, Mienis F, Morrison C, Prouty N, Roark B, Robertson C. 2017. Exploration and Research of Mid-Atlantic Deepwater Hard Bottom Habitats and Shipwrecks with Emphasis on Canyons and Coral Communities: Atlantic Deepwater Canyons Study. Draft Report. Sterling (VA): U.S. Dept. of the Interior, Bureau of Ocean Energy Management, Atlantic OCS Region. OCS Study BOEM 2017-060. 1,000 p. + apps.
Below are science projects associated with DISCOVRE.
Below are publications associated with this project.
Stability of temperate coral Astrangia poculata microbiome is reflected across different sequencing methodologies
Molecular characterization of Bathymodiolus mussels and gill symbionts associated with chemosynthetic habitats from the U.S. Atlantic margin
Deep search: Deep sea exploration to advance research on coral/canyon/cold seep habitats
The influence of seep habitats on sediment macrofaunal biodiversity and functional traits
Comparison of microbiomes of cold-water corals Primnoa pacifica and Primnoa resedaeformis, with possible link between microbiome composition and host genotype
Macrobenthic infaunal communities associated with deep‐sea hydrocarbon seeps in the northern Gulf of Mexico
The influence of different deep-sea coral habitats on sediment macrofaunal community structure and function
DEEP SEARCH: Deep sea exploration to advance research on coral/canyon/cold seep habitats
Discovering the deep: Exploring remote Pacific marine protected areas
Uptake and distribution of organo-iodine in deep-sea corals
Deepwater Program: Lophelia II, continuing ecological research on deep-sea corals and deep-reef habitats in the Gulf of Mexico
Canyons microbiology studies
Below are news stories associated with this project.
Below are partners associated with this project.
- Overview
DISCOVRE (DIversity, Systematics and COnnectivity of Vulnerable Reef Ecosystems) is an integrated, multidisciplinary, international effort investigating the unique and fragile deep-sea coral environments from the microscopic level to the ecosystem level.
Deep-Sea Coral ResourcesCheck out the links below for more information on deep-sea corals.
The Deep Sea
The deep sea refers to anything below 200 m depth in the ocean; beyond this depth, little to no sunlight reaches, temperatures drop, and pressure increases. Yet, life persists. Diverse environments, such as trenches, canyons, volcanoes, and seamounts, scattered over the seafloor are home to a diversity of fishes, crustaceans, anemones, sea stars, and corals.
Deep-sea corals are as colorful and diverse as their shallow-water counterparts, however, because of the lack of sunlight, deepwater corals obtain energy by using their tentacles to capture prey rather than through photosynthesis. Deep-sea coral reefs provide food and shelter for marine life, including commercially and recreationally important species, and play a critical role in the aquatic food web.
To better understand these little explored yet vital deep-sea coral reef ecosystems, USGS scientists from around the Nation contribute their expertise to the DISCOVRE effort. The multi-disciplinary approach examines components of microbiology, population genetics, paleoecology, food webs, taxonomy, community ecology, physical oceanography, seafloor characteristics, and submarine hazards. DISCOVRE relies on a network of partners from around the country and world, including the Bureau of Ocean Energy Management, National Oceanic and Atmospheric Administration (NOAA), and academic institutions. Using innovative tools and technologies, USGS scientists implement a multi-faceted research program that weaves together expertise in a variety of disciplines to investigate deepwater reefs.
Benthic Ecology
Benthic ecology is the term scientists use to describe the study of the animals living in or on the bottom of a water body. As part of the DISCOVRE project, the Benthic Ecology Group conducts research to understand community structure, biodiversity, trophic structure, and habitat connectivity of marine benthic ecosystems. The work involves examining the animals living in and on the seafloor in a variety of natural and artificial marine habitats:
- deep-sea and shallow-water corals,
- chemosynthetic seeps,
- shipwrecks,
- marine canyons, and
- wetland communities.
Marine Geology and Geophysics
Geology and geophysics refer to the study of physical structure and associated processes occurring on the planet. The USGS marine geology and geophysics team maps seafloor morphology and images the shallow sub-seafloor structure of the canyons, plateaus, and other components of the deep-sea landscape to better understand the processes that form and shape these features. Sampling sediment and rocks allows scientists to ground truth geophysical and visual observations, while providing valuable information about the composition and age of these underwater geologic environments.
Microbial Ecology
Microbial ecology is the study of microbes (bacteria, archaea, fungi, viruses), how they interact with each other, their host (if they are living on/in a plant or animal), and their environment.
Microbes are responsible for important ecosystem services, including biogeochemical cycling, nutrient availability, and structuring ecosystems by providing settlement cues to some invertebrates. Microbial associates have been shown to be key players in coral biology, serving functions such as fixing nitrogen, chelating iron, cycling waste products, and producing antibiotics to keep unwanted microbes from infecting the coral.
USGS identifies, characterizes, and enumerates environmental microbial communities, which are critical components of healthy marine ecosystems such as coral reefs, chemosynthetic seeps, and submarine canyons, with focus on coral microbiomes (both shallow and deep-sea), ecosystem metagenomics, and biodiversity.
Characterizing the microbial communities associated with deep-sea corals in these environments will increase the knowledge of the biodiversity in these ecosystems and provide insight into the variability or uniqueness of the corals between deep-sea environments.
Paleoclimatology
Paleoclimatology is the study of past climates using evidence found in a variety of the Earth's surfaces. USGS scientists are using long-lived black corals as archives to determine the climate and ocean chemistry over hundreds to thousands of years. Deep-sea corals are extremely useful in determining past climates, and recent developments in coral sampling techniques, as well as the ability to study corals in a wide variety of geographic areas, has increased the value of using deep-sea corals for climate change studies. Coral skeletons have rings, similar to trees, that help scientists determine environmental cycles and ocean variability.
Population Genetics
Population genetics is the study of genetic variation within and between populations. Understanding how the biodiversity of corals and other invertebrates is distributed throughout the deep-sea environment can help guide management of sensitive species, especially in areas of interest to oil and gas exploration. USGS uses genetic tools to characterize biodiversity and local and regional patterns of genetic connectivity among deep-sea coral habitats.
For more information:
CSA Ocean Sciences Inc. Ross S, Brooke S, Baird E, Coykendall E, Davies A, Demopoulos A, France S, Kellogg C, Mather R, Mienis F, Morrison C, Prouty N, Roark B, Robertson C. 2017. Exploration and Research of Mid-Atlantic Deepwater Hard Bottom Habitats and Shipwrecks with Emphasis on Canyons and Coral Communities: Atlantic Deepwater Canyons Study. Draft Report. Sterling (VA): U.S. Dept. of the Interior, Bureau of Ocean Energy Management, Atlantic OCS Region. OCS Study BOEM 2017-060. 1,000 p. + apps.
- Science
Below are science projects associated with DISCOVRE.
- Publications
Below are publications associated with this project.
Filter Total Items: 103Stability of temperate coral Astrangia poculata microbiome is reflected across different sequencing methodologies
The microbiome of the temperate coral Astrangia poculata was first described in 2017 using next-generation Illumina sequencing to examine the coral’s bacterial and archaeal associates across seasons and among hosts of differing symbiotic status. To assess the impact of methodology on the detectable diversity of the coral’s microbiome, we obtained near full-length Sanger sequences from clone librarAuthorsDawn B. Goldsmith, Zoe A. Pratte, Christina A. Kellogg, Sara E. Snader, Koty H. SharpMolecular characterization of Bathymodiolus mussels and gill symbionts associated with chemosynthetic habitats from the U.S. Atlantic margin
Mussels of the genus Bathymodiolus are among the most widespread colonizers of hydrothermal vent and cold seep environments, sustained by endosymbiosis with chemosynthetic bacteria. Presumed species of Bathymodiolus are abundant at newly discovered cold seeps on the Mid-Atlantic continental slope, however morphological taxonomy is challenging, and their phylogenetic affinities remain unestablishedAuthorsDolly (Katharine) Coykendall, Robert S. Cornman, Nancy G. Prouty, Sandra Brooke, Amanda W. J. Demopoulos, Cheryl L. MorrisonDeep search: Deep sea exploration to advance research on coral/canyon/cold seep habitats
Led by the Bureau of Ocean Energy Management (BOEM), the United States Geological Survey (USGS), and OER is an interagency partnership to explore and characterize sensitive deepwater habitats of the U.S. mid- and south Atlantic deep-sea habitats. Sponsored by the National Oceanographic Partnership Program, the study has brought together scientists from six U.S. academic institutions and five USGSAuthorsErik E. Cordes, Amanda W.J. Demopoulos, Michael Rasser, Caitlin AdamsThe influence of seep habitats on sediment macrofaunal biodiversity and functional traits
Chemosynthetic ecosystems in the Gulf of Mexico (GOM) support dense communities of seep megafaunal invertebrates that rely on endosymbiotic bacteria for nutrition. Distinct infaunal communities are associated with the biogenic habitats created by seep biota, where habitat heterogeneity and sediment geochemistry influence local macrofaunal community structure. Here we examine the community structurAuthorsAmanda W. J. Demopoulos, Jill R. Bourque, Alanna Durkin, Erik E. CordesComparison of microbiomes of cold-water corals Primnoa pacifica and Primnoa resedaeformis, with possible link between microbiome composition and host genotype
Cold-water corals provide critical habitats for a multitude of marine species, but are understudied relative to tropical corals. Primnoa pacifica is a cold-water coral prevalent throughout Alaskan waters, while another species in the genus, Primnoa resedaeformis, is widely distributed in the Atlantic Ocean. This study examined the V4-V5 region of the 16S rRNA gene after amplifying and pyrosequenciAuthorsDawn B. Goldsmith, Christina A. Kellogg, Cheryl L. Morrison, Michael A. Gray, Robert P. Stone, Rhian G. Waller, Sandra D. Brooke, Steve W. RossMacrobenthic infaunal communities associated with deep‐sea hydrocarbon seeps in the northern Gulf of Mexico
There are thousands of seeps in the deep ocean worldwide; however, many questions remain about their contributions to global biodiversity and the surrounding deep‐sea environment. In addition to being globally distributed, seeps provide several benefits to humans such as unique habitats, organisms with novel genes, and carbon regulation. The purpose of this study is to determine whether there areAuthorsTravis W. Washburn, Amanda W.J. Demopoulos, Paul A. MontagnaThe influence of different deep-sea coral habitats on sediment macrofaunal community structure and function
Deep-sea corals can create a highly complex, three-dimensional structure that facilitates sediment accumulation and influences adjacent sediment environments through altered hydrodynamic regimes. Infaunal communities adjacent to different coral types, including reef-building scleractinian corals and individual colonies of octocorals, are known to exhibit higher macrofaunal densities and distinct cAuthorsJill R. Bourque, Amanda W.J. DemopoulosDEEP SEARCH: Deep sea exploration to advance research on coral/canyon/cold seep habitats
Launched in August 2017, Deep Sea Exploration to Advance Research on Coral/Canyon/Cold seep Habitats (DEEP SEARCH) is a multiyear, multi-agency study to characterize the deep-sea ecosystems of the US Mid- and South Atlantic (Figure 1). The study is funded through an interagency partnership between NOAA, the Bureau of Ocean Energy Management (BOEM), and the US Geological Survey, and it is sponsoredAuthorsErik E. Cordes, Amanda W. J. Demopoulos, Gregory Boland, Caitlin AdamsDiscovering the deep: Exploring remote Pacific marine protected areas
The 2017 Discovering the Deep expedition provided the first glimpse of the deep-sea geology and ecology of the deepwater regions of Swains Island, the Howland and Baker Islands Unit of PRIMNM, Phoenix Islands Protected Areas (PIPA), and the Tokelau Region (Figure 1). Prior to this expedition, virtually no visual reconnaissance had been conducted in any of these areas below scuba diving depths. ROVAuthorsAmanda W.J. Demopoulos, Steven Auscavitch, Derek Sowers, Nikolai Pawlenko, Brian R. C. KennedyUptake and distribution of organo-iodine in deep-sea corals
Understanding iodine concentration, transport, and bioavailability is essential in evaluating iodine's impact to the environment and its effectiveness as an environmental biogeotracer. While iodine and its radionuclides have proven to be important tracers in geologic and biologic studies, little is known about transport of this element to the deep sea and subsequent uptake in deep-sea coral habitaAuthorsNancy G. Prouty, E. Brendan Roark, Leslye M. Mohon, Ching-Chih ChangDeepwater Program: Lophelia II, continuing ecological research on deep-sea corals and deep-reef habitats in the Gulf of Mexico
The deep sea is a rich environment composed of diverse habitat types. While deep-sea coral habitats have been discovered within each ocean basin, knowledge about the ecology of these habitats and associated inhabitants continues to grow. This report presents information and results from the Lophelia II project that examined deep-sea coral habitats in the Gulf of Mexico. The Lophelia II project focAuthorsAmanda W.J. Demopoulos, Steve W. Ross, Christina A. Kellogg, Cheryl L. Morrison, Martha S. Nizinski, Nancy G. Prouty, Jill R. Bourque, Julie P. Galkiewicz, Michael A. Gray, Marcus J. Springmann, D. Katharine Coykendall, Andrew Miller, Mike Rhode, Andrea Quattrini, Cheryl L. Ames, Sandra D. Brooke, Jennifer P. McClain-Counts, E. Brendan Roark, Noreen A. Buster, Ryan M. Phillips, Janessy FrometaCanyons microbiology studies
Off the eastern coast of the United States, several deep canyons cut through the continental shelf, acting like funnels to move sediment from the shelf out to the deep seafloor. Exposed rock outcrops and ledges along the walls of these canyons provide important habitat for deepsea corals and sponges. Although a few scientific expeditions have visited these canyons in the 1970s (Hecker and BlechschAuthorsChristina A. Kellogg, Stephanie N. Lawler - Web Tools
- News
Below are news stories associated with this project.
Filter Total Items: 40 - Partners
Below are partners associated with this project.