Western Fisheries Research Center

Publications

Filter Total Items: 2,251
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Year Published: 2018

Ichthyophonus in sport-caught groundfishes from southcentral Alaska

This report of Ichthyophonus in common sport-caught fishes throughout the marine waters of southcentral Alaska represents the first documentation of natural Ichthyophonus infections in lingcod Ophiodon elongates and yelloweye rockfish Sebastes ruberrimus. In addition, the known geographic range of ...

Harris, Bradley P.; Webster, Sarah R.; Wolf, Nathan; Gregg, Jacob L.; Hershberger, Paul
Harris, B.P., S.R. Webster, N. Wolf, J.L. Gregg, and P.K. Hershberger. 2018. Ichthyophonus in sport-caught groundfishes from southcentral Alaska. Diseases of Aquatic Organisms 128(2):169-173.

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Year Published: 2018

Analytical and diagnostic performance of a qPCR assay for Ichthyophonus spp. compared to the tissue culture ‘gold standard’

Parasites of the genus Ichthyophonus infect many fish species and have a non-uniform distribution within host tissues. Due in part to this uneven distribution, the comparative sensitivity and accuracy of using molecular-based detection methods versus culture to estimate parasite prevalence is under debate. We evaluated the analytical and...

Lowe, Vanessa C.; Hershberger, Paul K.; Friedman, Carolyn S.
Lowe, V.C., P.K. Hershberger, and C.S. Friedman. 2018. Analytical and diagnostic performance of a qPCR assay for Ichthyophonus spp. compared to the tissue culture ‘gold standard’. Dis Aquat. Org. 128(3): 215-224.

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Year Published: 2018

Infection by Nanophyetus salmincola and toxic contaminant exposure in out‐migrating steelhead from Puget Sound, Washington: Implications for early marine survival

Out‐migrating steelhead Oncorhynchus mykiss from four Puget Sound rivers and associated marine basins of Puget Sound in Washington State were examined for the parasite, Nanophyetus salmincola in 2014 to determine whether recent trends in reduced marine survival are associated with the presence of this pathogen. A subset of...

Chen, M.F.; O'Neill, S. M.; Carey, A. J.; Conrad, R. H.; Stewart, B. A.; Snekvik, K. R.; Ylitalo, G. M.; Hershberger, Paul
Chen, M.F., S.M. O’Neill, A.J. Carey, R.H. Conrad, B.A. Stewart, K.R. Snekvik, G.M. Ylitalo, and P.K. Hershberger. 2018. Infection by Nanophyetus salmincola and toxic contaminant exposure in out‐migrating steelhead from Puget Sound, Washington: Implications for early marine survival. J. Aquat Anim Health 30(2): 103-118.

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Year Published: 2018

Estimating freshwater productivity, overwinter survival, and migration patterns of Klamath River Coho Salmon

An area of great importance to resource management and conservation biology in the Klamath Basin is balancing water usage against the life history requirements of threatened Coho Salmon. One tool for addressing this topic is a freshwater dynamics model to forecast Coho Salmon productivity based on environmental inputs. Constructing such a...

Manhard, Christopher V.; Som, Nicholas A.; Perry, Russell W.; Faukner, Jimmy; Soto, Toz
Manhard, C.V., N.A. Som, R.W. Perry, J.R. Faukner, and T. Soto. 2018. Estimating freshwater productivity, overwinter survival, and migration patterns of Klamath River Coho Salmon. U.S. Fish and Wildlife Service. Arcata Fish and Wildlife Office, Arcata Fisheries Technical Report Number TR 2018-33, Arcata, California.

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Year Published: 2018

Estimation of stream conditions in tributaries of the Klamath River, northern California

Because of their critical ecological role, stream temperature and discharge are requisite inputs for models of salmonid population dynamics. Coho Salmon inhabiting the Klamath Basin spend much of their freshwater life cycle inhabiting tributaries, but environmental data are often absent or only seasonally available at these locations. To address...

Manhard, Christopher V.; Som, Nicholas A.; Jones, Edward C.; Perry, Russell W.
Manhard, C.V., N.A. Som, E.C. Jones, and R.W. Perry. 2018. Estimation of stream conditions in tributaries of the Klamath River, Northern California. U.S. Fish and Wildlife Service. Arcata Fish and Wildlife Office, Arcata Fisheries Technical Report Number TR 2018-32, Arcata, California.

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Year Published: 2018

Trophic compression of lake food webs under hydrologic disturbance

The need to protect biostructure is increasingly recognized, yet empirical studies of how human exploits affect ecological networks are rare. Studying the effects of variation in human disturbance intensity from decades past can help us understand and anticipate ecosystem change under alleviated or amplified disturbance over decades to come. Here...

Hansen, Adam G.; Gardner, Jennifer R.; Connelly, Kristin A.; Polacek, Matt; Beauchamp, David A.
Hansen, A.G., J.R. Gardner, K.A. Connelly, M. Polacek, and D.A. Beauchamp. 2018. Trophic compression of lake food webs under hydrologic disturbance. Ecosphere 9(6): e02304

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Year Published: 2018

Substrate and flow characteristics associated with White Sturgeon recruitment in the Columbia River Basin

A study was conducted to identify habitat characteristics associated with age 0+ White Sturgeon (Acipenser transmontanus Richardson, 1863) recruitment in three reaches of the Columbia River Basin: Skamania reach (consistent recruitment), John Day reach (intermittent/inconsistent recruitment), and Kootenai reach (no recruitment). Our modeling...

Hatten, James R.; Parsley, Michael; Barton, Gary; Batt, Thomas; Fosness, Ryan L.
Hatten, J.R., M.J. Parsley, G.J. Garton, T.R. Batt, and R.L. Fosness. 2018. Substrate and flow characteristics associated with White Sturgeon recruitment in the Columbia River. Heliyon 4(5): e00629.

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Year Published: 2018

Effects of the proposed California WaterFix North Delta Diversion on survival of juvenile Chinook salmon (Oncorhynchus tshawytscha) in the Sacramento-San Joaquin River Delta, northern California

The California Department of Water Resources and Bureau of Reclamation propose new water intake facilities on the Sacramento River in northern California that would convey some of the water for export to areas south of the Sacramento-San Joaquin River Delta (hereinafter referred to as the Delta) through tunnels rather than through the Delta. The...

Perry, Russell W.; Pope, Adam C.
Perry, R.W., and Pope, A.C., 2018, Effects of the proposed California WaterFix North Delta Diversion on survival of juvenile Chinook salmon (Oncorhynchus tshawytscha) in the Sacramento-San Joaquin River Delta, northern California: U.S. Geological Survey Open-File Report 2018-1078, 94 p. plus appendixes, https://doi.org/10.3133/ofr20181078.

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Year Published: 2018

Research, monitoring, and evaluation of emerging issues and measures to recover the Snake River fall Chinook salmon ESU

The portion of the Snake River fall Chinook Salmon Oncorhynchus tshawytscha ESU that spawns upstream of Lower Granite Dam transitioned from low to high abundance during 1992–2017 in association with U.S. Endangered Species Act recovery efforts and other federally mandated actions. This annual report focuses on (1) numeric and habitat use responses...

Tiffan, Kenneth; Plumb, John M.; Perry, Russell W.; Erhardt, John; Hemingway, Rulon J.; Bickford, Brad; Rhodes, Tobyn N.; Connor, William P.; Mullins, Frank L.
Connor, W.P., F.L. Mullins, K.F. Tiffan, J.M. Plumb, R.W. Perry, J.M. Erhardt, R.J. Hemingway, B.K. Bickford, and T.N. Rhodes. 2018. Research, monitoring, and evaluation of emerging issues and measures to recover the Snake River fall Chinook salmon ESU. January, 2017 – December, 2017. Bonneville Power Administration. Project Number 199102900. 67 p.

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Year Published: 2018

Status and trends of adult Lost River (Deltistes luxatus) and shortnose (Chasmistes brevirostris) sucker populations in Upper Klamath Lake, Oregon, 2017

Executive SummaryData from a long-term capture-recapture program were used to assess the status and dynamics of populations of two long-lived, federally endangered catostomids in Upper Klamath Lake, Oregon. Lost River suckers (LRS; Deltistes luxatus) and shortnose suckers (SNS; Chasmistes brevirostris) have been captured and tagged with passive...

Hewitt, David A.; Janney, Eric C.; Hayes, Brian S.; Harris, Alta C.
Hewitt, D.A., Janney, E.C., Hayes, B.S., and Harris, A.C., 2018, Status and trends of adult Lost River (Deltistes luxatus) and shortnose (Chasmistes brevirostris) sucker populations in Upper Klamath Lake, Oregon, 2017: U.S. Geological Survey Open-File Report 2018-1064, 31 p., https://doi.org/10.3133/ofr20181064.

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Year Published: 2018

Juvenile Lost River and shortnose sucker year class strength, survival, and growth in Upper Klamath Lake, Oregon, and Clear Lake Reservoir, California—2016 Monitoring Report

Executive SummaryThe largest populations of federally endangered Lost River (Deltistes luxatus) and shortnose suckers (Chasmistes brevirostris) exist in Upper Klamath Lake, Oregon, and Clear Lake Reservoir, California. Upper Klamath Lake populations are decreasing because adult mortality, which is relatively low, is not being balanced by...

Burdick, Summer M.; Ostberg, Carl O.; Hoy, Marshal S.
Burdick, S.M., Ostberg, C.O., and Hoy, M.S., 2018, Juvenile Lost River and shortnose sucker year class strength, survival, and growth in Upper Klamath Lake, Oregon, and Clear Lake Reservoir, California—2016 Monitoring Report: U.S. Geological Survey Open-File Report 2018–1066, 43 p., https://doi.org/10.3133/ofr20181066.

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Year Published: 2018

Science partnership between U.S. Geological Survey and the Lower Elwha Klallam Tribe—Understanding the Elwha River Dam Removal Project

After nearly a century of producing power, two large hydroelectric dams on the Elwha River in Washington State were removed during 2011 to 2014 to restore the river ecosystem and recover imperiled salmon populations. Roughly two-thirds of the 21 million cubic meters of sediment—enough to fill nearly 2 million dump trucks—contained behind the dams...

Duda, Jeffrey J.; Beirne, Matt M.; Warrick, Jonathan A.; Magirl, Christopher S.
Duda, J.J., Beirne, M.M., Warrick, J.A., and Magirl, C.S., 2018, Science partnership between U.S. Geological Survey and the Lower Elwha Klallam Tribe—Understanding the Elwha River Dam Removal Project: U.S. Geological Survey Fact Sheet 2018–3025, 4 p., https://doi.org/10.3133/fs20183025.