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Community for data integration 2020 annual report

The Community for Data Integration is a community of practice whose purpose is to advance the data integration capabilities of the U.S. Geological Survey. In fiscal year 2020, the Community for Data Integration held 11 monthly forums, facilitated 13 collaboration areas, and supported 13 projects. The activities supported the broad U.S. Geological Survey priority of producing building blocks for do
Authors
Leslie Hsu, Amanda N. Liford, Grace C. Donovan

Tick abundance, diversity and pathogen data collected by the National Ecological Observatory Network

Cases of tick-borne diseases have been steadily increasing in the USA, owing in part to tick range expansion, land cover and associated host population changes, and habitat fragmentation. However, the relative importance of these and other potential drivers remain poorly understood within this complex disease system. Ticks are ectotherms with multi-host lifecycles, which makes them sensitive to ch
Authors
S. H. Paull, K. M. Thibault, Abigail Benson

Credit where credit is due

Credit is the currency of science. Scientists are evaluated and promoted in their jobs and professional communities on the basis of their recognized contributions to science. Unlike a financial contribution, a scientific contribution is difficult to measure. Traditionally, credit for scientific contributions has been given through authorship and citations in scientific literature as well as awards
Authors
Mark A. Parsons, Daniel S. Katz, Madison Langseth, Hampapuram Ramapriyan, Sarah Ramdeen

Credit where credit is due

Credit is the currency of science. Scientists are evaluated and promoted in their jobs and professional communities on the basis of their recognized contributions to science. Unlike a financial contribution, a scientific contribution is difficult to measure. Traditionally, credit for scientific contributions has been given through authorship and citations in scientific literature as well as awards
Authors
Mark A. Parsons, Daniel S. Katz, Madison Langseth, Hampapuram Ramapriyan, Sarah Ramdeen

Accessibility of environmental data for sharing: The role of UX in large cyberinfrastructure projects

Incorporating user experience (UX) testing when creating research cyberinfrastructure is often overlooked, but if left too late, the cost of retrofitting is considerable, and the very clients the cyberinfrastructure was built to serve may be lost. Successfully integrating UX testing into the product development cycle can be difficult but rewarding. This paper describes how UX evaluations were inco
Authors
Rachel Volentine, Alison Specht, Suzie Allard, Mike Frame, Rachael Hu, Lisa Zolly

Biology: Integrating core to essential variables (Bio-ICE) task team report for hard corals

The Interagency Ocean Observation Committee (IOOC) is chartered by the White House Office of Science and Technology Policy (OSTP) Subcommittee on Ocean Science and Technology (SOST). The purpose of the IOOC is to advise, assist, and make recommendations to the SOST on matters related to ocean observations via task teams such as the Biology - Integrating Core to Essential Variables (Bio-ICE) task t
Authors
E. K. Towle, Abigail Benson, Matt Biddle, Sarah Bingo, Kaitlyn Brucker, Gabrielle Canonico, Maggie Chory, Kruit Desai, Masha Edmondson, Miguel Figuerola, Christina Horstmann, Susan K Jackson, Jen Koss, J. Landrum, Kathryn Lohr, Laura Lorenzoni, Anderson Mayfield, Brian Melzin, Frank Muller-Karger, Sarah O'Conner, Deb Santavy, Curt Storlazzi, Anna Toline, Juan Torres-Perez, Kimberly K. Yates

Using fish community and population indicators to assess the biological condition of streams and rivers of the Chesapeake Bay watershed, USA

The development of indicators to assess relative freshwater condition is critical for management and conservation. Predictive modeling can enhance the utility of indicators by providing estimates of condition for unsurveyed locations. Such approaches grant understanding of where “good” and “poor” conditions occur and provide insight into landscape contexts supporting such conditions. However, as a
Authors
Kelly O. Maloney, Kevin P. Krause, Matt J. Cashman, Wesley Daniel, Benjamin Paul Gressler, Daniel J. Wieferich, John A. Young

Ten simple rules for creating a scientific web application

The use of scientific web applications (SWApps) across biological and environmental sciences has grown exponentially over the past decade or so. Although quantitative evidence for such increased use in practice is scant, collectively, we have observed that these tools become more commonplace in teaching, outreach, and in science coproduction (e.g., as decision support tools). Despite the increased
Authors
Jessica Leigh Burnett, Renee Dale, Chung Yi Hou, Gabriela Palomo-Muñoz, Kaitlin Stack-Whitney, Steven Aulenbach, R. Sky Bristol, Denis Valle, Tristan Wellman

Changes in liquefaction severity in the San Francisco Bay Area with sea-level rise

This paper studies the impacts of sea-level rise on liquefaction triggering and severity around the San Francisco Bay Area, California, for the M 7.0 “HayWired” earthquake scenario along the Hayward fault. This work emerged from stakeholder engagement for the US Geological Survey releases of the HayWired earthquake scenario and the Coastal Storm Modeling System projects, in which local planners an
Authors
Alex R. R. Grant, Anne Wein, Kevin M. Befus, Juliette Finzi-Hart, Mike Frame, Rachel Volentine, Patrick L. Barnard, Keith L. Knudsen

Capacity assessment for Earth Monitoring, Analysis, and Prediction (EarthMAP) and future integrated monitoring and predictive science at the U.S. Geological Survey

Executive SummaryManagers of our Nation’s resources face unprecedented challenges driven by the convergence of increasing, competing societal demands and a changing climate that affects the stability, vulnerability, and predictability of those resources. To help meet these challenges, the scientific community must take advantage of all available technologies, data, and integrative Earth systems mo
Authors
Jennifer L. Keisman, Sky Bristol, David S. Brown, Allison K. Flickinger, Gregory Gunther, Peter S. Murdoch, MaryLynn Musgrove, John C. Nelson, Gregory D. Steyer, Kathryn A. Thomas, Ian R. Waite

Establishing the foundation for the global observing system for marine life

Maintaining healthy, productive ecosystems in the face of pervasive and accelerating human impacts including climate change requires globally coordinated and sustained observations of marine biodiversity. Global coordination is predicated on an understanding of the scope and capacity of existing monitoring programs, and the extent to which they use standardized, interoperable practices for data ma
Authors
Erin V. Satterthwaite, Nicholas J. Bax, Patricia Miloslavich, Lavenia Ratnarajah, Gabrielle Canonico, Daniel Dunn, Samantha E. Simmons, Roxanne J. Carini, Karen Evans, Valerie Allain, Ward Appeltans, Sonia Batten, Lisandro Benedetti-Cecchi, Anthony T. F. Bernard, R. Sky Bristol, Abigail Benson, Pier Luigi Buttigieg, Leopoldo Cavaleri Gerhardinger, Sanae Chiba, Tammy E. Davies, J. Emmett Duffy, Alfredo Giron-Nava, Astrid J. Hsu, Alexandra C. Kraberg, Raphael M. Kudela, Dan Lear, Enrique Montes, Frank Muller-Karger, Todd D. O'Brien, David Obura, Pieter Provoost, Sara Pruckner, Lisa-Maria Rebelo, Elizabeth R. Selig, Olav Sigurd Kjesbu, Craig Starger, Rick D. Stuart-Smith, Marjo Vierros, John S. Waller, Lauren V. Weatherdon, Tristan Wellman, Anna Zivian

Data services in ocean science with a focus on the biology

Biological ocean science has a long history; it goes back millennia, whereas the related data services have emerged in the recent digital era of the past decades. To understand where we come from—and why data services are so important—we will start by taking you back to the rise in the study of marine biology—marine biodiversity—and its key players, before immersing ourselves in the data life cycl
Authors
Joana Beja, Leen Vandepitte, Abigail Benson, Anton Van de Putte, Dan Lear, Daphnis De Pooter, Gwenaëlle Moncoiffé, John Nicholls, Nina Wambiji, Patricia Miloslavich, Vasilis Gerovasileiou