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Publications

Browse more than 160,000 publications authored by our scientists over the past 100+ year history of the USGS.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.

Filter Total Items: 170219

Sediment budget of a Maumee River headwater tributary: How streambank erosion, streambed-sediment storage, and streambed-sediment source inform our understanding of legacy phosphorus

ObjectiveWe described source and phosphorus (P) retention potential of soft, fine-grained, streambed sediment and associated phosphorus (sed-P) during summer low-flow conditions. Combining in-channel, sed-P storage with relative age provided context on relevance to western Lake Erie Basin management goals.MethodsIn 2019, rapid geomorphic assessment (30 reaches) compared streambed-sediment storage
Authors
Tanja N. Williamson, Faith Fitzpatrick, Rebecca Kreiling, James Blount, Diana L. Karwan

Fewer bowl traps and more hand netting can increase effective number of bee species and reduce excessive captures

Reports increasingly point to substantial declines in wild bee abundance and diversity, yet there is uncertainty about how best to measure these attributes in wild bee populations. Two commonly used methods are passive trapping with bee bowls or active netting of bees on flowers, but each of these has drawbacks. Comparing the outcomes of the two methods is complicated by their uncomparable units o
Authors
Diane L. Larson, Nora P. Pennarola, Julia B. Leone, Jennifer L. Larson

Foraging behavior and age affect maternal transfer of mercury to northern elephant seal pups

Deep ocean foraging northern elephant seals (Mirounga angustirostris) consume fish and squid in remote depths of the North Pacific Ocean. Contaminants bioaccumulated from prey are subsequently transferred by adult females to pups during gestation and lactation, linking pups to mercury contamination in mesopelagic food webs (200–1000 m depths). Maternal transfer of mercury to developing seal pups w
Authors
Sarah H. Peterson, Michael G. Peterson, Josh T. Ackerman, Cathy Debier, Chandra Goetsch, Rachel R. Holser, Luis A. Hückstädt, Jennifer C. Johnson, Theresa R. Keates, Birgitte I. McDonald, Elizabeth A. McHuron, Daniel P. Costa

Metabarcoding is (usually) more cost effective than seining or qPCR for detecting tidewater gobies and other estuarine fishes

Many studies have shown that environmental DNA (eDNA) sampling can be more sensitive than traditional sampling. For instance, past studies found a specific qPCR probe of a water sample is better than a seine for detecting the endangered northern tidewater goby, Eucyclogobius newberryi. Furthermore, a metabarcoding sample often detects more fish species than a seine detects. Less consideration has
Authors
Kevin D. Lafferty

High inter-population connectivity and occasional gene flow between subspecies improves recovery potential for the endangered Least Bell’s Vireo

Increasingly, genomic data are being used to supplement field-based ecological studies to help evaluate recovery status and trends in endangered species. We collected genomic data to address two related questions regarding the Least Bell’s Vireo (Vireo bellii), an endangered migratory songbird restricted to southern California riparian habitat for breeding. First, we sought to delineate the range
Authors
A. G. Vandergast, Barbara E. Kus, Dustin A. Wood, Anna Mitelberg, Julia G. Smith, Elizabeth R. Milano

Joint spatial modeling bridges the gap between disparate disease surveillance and population monitoring efforts informing conservation of at-risk bat species

White-Nose Syndrome (WNS) is a wildlife disease that has decimated hibernating bats since its introduction in North America in 2006. As the disease spreads westward, assessing the potentially differential impact of the disease on western bat species is an urgent conservation need. The statistical challenge is that the disease surveillance and species response monitoring data are not co-located, av
Authors
Christian Stratton, Kathryn Irvine, Katharine M. Banner, Emily S. Almberg, Daniel Bachen, Kristina Smucker

The geochemistry of continental hydrothermal systems

Hydrothermal systems on the continents are of great significance because they are primary sources of economically important metals and geothermal energy, they are tourist attractions, they support bathing and health resorts, and they host extreme life forms. Research on hot springs and their deposits provide clues to early life on Earth and possibly on Mars and have led to major breakthroughs in b
Authors
Shaul Hurwitz, Andri Stefánsson, Everett L. Shock, Barbara I. Kleine

Flow cytometric assessments of metabolic activity in bacterial assemblages provide insight into ecosystem condition along the Buffalo National River, Arkansas

The Buffalo National River (BNR), on karst terrain in Arkansas, is considered an extraordinary water resource. Water collected in Spring 2017 along BNR was metagenomically analyzed using 16S rDNA, and for 17 months (5/2017–11/2018), bacterial responses were measured in relation to nutrients sampled along a stretch of BNR near a concentrated animal feed operation (CAFO) on Big Creek. Because cell c
Authors
Jill Jenkins, Rassa Dale, Nina M. Hoffpauir, Brooke A Baudoin, Caroline Matkin, Lucas Driver, Shawn W Hodges, Bonnie L. Brown

Non-mercury methylating microbial taxa are integral to understanding links between mercury methylation and elemental cycles in marine and freshwater sediments

The goal of this study was to explore the role of non-mercury (Hg) methylating taxa in mercury methylation and to identify potential links between elemental cycles and Hg methylation. Statistical approaches were utilized to investigate the microbial community and biochemical functions in relation to methylmercury (MeHg) concentrations in marine and freshwater sediments. Sediments were collected fr
Authors
Yong-Li Wang, Kaoru Ikuma, Scott C. Brooks, Matthew S. Varonka, Amrika Deonarine

20th century warming in the lower Florida Keys was dominated by increasing winter temperatures

Long-lived Atlantic coral species like Orbicella faveolata are important archives of oceanographic change in shallow, marine environments like the Florida Keys. Not only can coral-based records extend for multiple centuries beyond the limits of the instrumental record, but they can also provide a more accurate representation of in situ conditions than gridded interpolated sea-surface temperature (
Authors
Jennifer A. Flannery, Julie N. Richey, Lauren Toth, Madelyn Jean Mette

Urbanization and water management control stream water quality along a mountain to plains transition

Urbanization can have substantial effects on water quality due to altered hydrology and introduction of constituents to water bodies. In arid and semi-arid environments, streams are further stressed by dewatering as a result of diversions. We conducted a high-resolution synoptic survey of two streams in Colorado, USA that transition abruptly from granitic/metamorphic forested mountains to sediment
Authors
Sheila F. Murphy, Robert L. Runkel, Edward G. Stets, Alex J Nolan, Deborah A. Repert