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Publications

Browse more than 160,000 publications authored by our scientists over the past 100+ year history of the USGS.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.

Filter Total Items: 74184

Exploring landscape and geologic controls on spatial patterning of streambank groundwater discharge in a mixed land use watershed

Preferential groundwater discharge features along stream corridors are ecologically important at local and stream network scales, yet we lack quantification of the multiscale controls on the spatial patterning of groundwater discharge. Here we identify physical attributes that best explain variation in the presence and lateral extent of preferential groundwater discharges along two 5th order strea
Authors
Kevin E. Jackson, Eric M. Moore, Ashley M. Helton, Adam B. Haynes, Janet R. Barclay, Martin Briggs

Prokaryotic microbial ecology as an ecosurveillance tool for eukaryotic pathogen colonisation: Meiothermus and Naegleria fowleri

Naegleria fowleri has been detected in drinking water distribution systems (DWDS) in Australia, Pakistan and the United States and is the causative agent of the highly fatal disease primary amoebic meningoencephalitis. Previous small scale field studies have shown that Meiothermus may be a potential biomarker for N. fowleri. However, correlations between predictive biomarkers in small sample sizes
Authors
Natalia Malinowski, Matthew J. Morgan, Jason Wylie, Tom Walsh, Sergio Domingos, Suzanne Metcalfe, Anna H. Kaksonen, Elliott Barnhart, Rebecca C. Mueller, Brent M. Peyton, Geoffrey J. Puzon

Molecular sexing of birds using quantitative PCR (qPCR) of sex-linked genes and logistic regression models

The ability to sex individuals is an important component of many behavioural and ecological investigations and provides information for demographic models used in conservation and species management. However, many birds are difficult to sex using morphological characters or traditional molecular sexing methods. In this study, we developed probabilistic models for sexing birds using quantitative PC
Authors
Eleni Leto Petrou, Laura Celeste Scott, Cherie Marie Mckeeman, Andrew M. Ramey

Low flows from drought and water use reduced total dissolved solids fluxes in the Lower Colorado River Basin between 1976 to 2008

Study area:We evaluated the Virgin, Verde, Salt, and Gila Rivers in the Lower Colorado River Basin. The watersheds have extents in Arizona, Utah, New Mexico, US and Sonora, MX.Study focus:We calculated trends in total dissolved solids (TDS) concentrations and fluxes with the Weighted Regressions on Time, Discharge and Season model. The modeling framework leverages daily streamflow and discrete wat
Authors
Annie L. Putman, Hannah Erin Mcilwain, Christine Rumsey, Thomas M. Marston

Matching decision support modeling frameworks to disease emergence stages and associated management objectives

Wildlife disease management decisions often require rapid responses to situations that are fraught with uncertainty. By recognizing that management is implemented to achieve specific objectives, resource managers and science partners can identify an analysis technique and develop a monitoring plan to evaluate management effectiveness. For emerging infectious diseases, objectives may take several d
Authors
Evan H. Campbell Grant, Brittany A. Mosher, Riley Bernard, Alexander Wright, Robin Russell

Seasonal and decadal subsurface thaw dynamics of an Aufeis feature investigated through numerical simulations

Aufeis (also known as icings) are large sheet-like masses of layered ice that form in river channels in arctic environments in the winter as groundwater discharges to the land surface and subsequently freezes. Aufeis are important sources of water for Arctic river ecosystems, bolstering late summer river discharge and providing habitat for caribou escaping insect harassment. The aim of this resear
Authors
Alexi Lainis, Roseanna M. Neupauer, Joshua C. Koch, Michael Gooseff

Insight into sources of benzene, TCE, and PFOA/PFAS in groundwater at Naval Air Station Whiting Field, Florida, through numerical particle-tracking simulations

Past waste-disposal activities at Naval Air Station Whiting Field (NASWF) have led to elevated concentrations of contaminants in the underlying sand and gravel aquifer. Contaminants include two of the most commonly detected chemicals in groundwater in many countries (benzene and trichloroethylene (TCE)) and the “forever chemicals” per- and poly-fluoroalkyl substances (PFAS) such as perfluorooctano
Authors
Eric Swain, James E. Landmeyer, Michael A. Singletary, Shannon E. Provenzano

The post-emergence period for denning polar bears: Phenology and influence on cub survival

Among polar bears (Ursus maritimus), only parturient females den for extended periods, emerging from maternal dens in spring after having substantially depleted their energy reserves during a fast that can exceed 8 months. Although den emergence coincides with a period of increasing prey availability, polar bears typically do not depart immediately to hunt, but instead remain at the den for up to
Authors
Erik Andersen, Ryan R. Wilson, Karyn D. Rode, George M. Durner, Todd C. Atwood, David Gustine

Characterization of change in tree cover state and condition over the conterminous United States

Variability in the effects of disturbances and extreme climate events can lead to changes in tree cover over time, including partial or complete loss, with diverse ecological consequences. It is therefore critical to identify in space and time the change processes that lead to tree cover change. Studies of change are often hampered by the lack of data capable of consistently detecting different ty
Authors
Francis K Dwomoh, Roger F. Auch

First Occurrence of the nonindigenous Asian foraminifera Ammonia confertitesta in the Northeastern Pacific Ocean: Vancouver Island, British Columbia, Canada

Observations in 2022 of intertidal and subtidal foraminiferal faunas at four localities along the central-eastern side of Vancouver Island, British Columbia, Canada, and molecular analyses have documented the first occurrence of the nonindigenous Asian species Ammonia confertitesta Zheng in the northwestern Pacific Ocean. The species was present at three of these localities: Davis Lagoon south of
Authors
Mary McGann, Maria Holzmann

Implementation of the CREED approach for environmental assessments

Environmental exposure data are a key component of chemical and ecological assessments, supporting and guiding environmental management decisions and regulations. Measures taken to protect the environment based on exposure data can have social and economic implications. Flawed information may lead to measures being taken in the wrong place or to important action not being taken. Although the advan
Authors
Carolina Di Paolo, Irene Bramke, Jenny Stauber, Caroline Whalley, Ryan R. Otter, Yves Verhaegen, Lisa H. Nowell, Adam C. Ryan

Analysis adapted from text mining quantitively reveals abrupt and gradual plant-community transitions after fire in sagebrush steppe

ContextPlant communities vary both abruptly and gradually over time but differentiating between types of change can be difficult with existing classification and ordination methods. Structural topic modeling (STRUTMO), a text mining analysis, offers a flexible methodology for analyzing both types of temporal trends.ObjectivesOur objectives were to (1) identify post-fire dominant sagebrush steppe p
Authors
Cara Applestein, Christopher R. Anthony, Matthew Germino