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An official USGS software project is code reviewed and approved at the bureau-level for distribution.

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Decision-Support Tool to Estimate SARS-CoV-2 Human-to-bat Transmission Risk

Decision-Support Tool to Estimate SARS-CoV-2 Human-to-bat Transmission Risk

Code to access the Central United States Velocity Model, v1.3

We have developed a new three-dimensional seismic velocity model of the central United States (CUSVM) that includes the New Madrid Seismic Zone (NMSZ) and covers parts of Arkansas, Mississippi, Alabama, Illinois, Missouri, Kentucky, and Tennessee (Ramirez Guzman et al, 2012). The model represents a compilation of decades of crustal research consisting of seismic, aeromagnetic, and gravity profiles

Marfac Machine Vision Camera Interface

This project contains the C# software developed to control and acquire imagery from a FLIR GigE machine vision camera. It is built using the FLIR Spinnaker 64bit SDK version 2.4.0.144 and requires the spinview application and associated dll's. This software was developed using Microsoft Visual Studio 2019 to control and acquire imagery from a GigE machine vision camera (Model: BFS-PGE-50S5C-C, t

Marfac Machine Vision Camera Interface

This project contains the C# software developed to control and acquire imagery from a FLIR GigE machine vision camera. It is built using the FLIR Spinnaker 64bit SDK version 2.4.0.144 and requires the spinview application and associated dll's.

climatchR: An implementation of Climatch in R

Matching climate envelopes of allows people to examine how potential invasive species may match habitats. The Australian government created Climatch to do allow for these comparisons. However, this webpage does not allow for readily scripting climate matching. Hence, the authors created climatchR, an R package (R Core Team 2020) implementing the climatch method in R. This was created to allow auto

Dam Removal Information Portal Dashboard Python Dash Software

The Dam Removal Information Portal (DRIP) contains information about the geographic locations of dam removals and any associated scientific studies evaluating outcomes to physical, biological, and water quality parameters. This application uses Python DASH to help distribute and visualize information from the Dam Removal Information Portal API (DRIP API).

Data analysis and figures for Differences in Rhizosphere Microbial Communities Between Native and Non-Native Phragmites australis May Depend on Stand Density

This repository holds the code to reproduce the data analyses and figures found in "Differences in Rhizosphere Microbial Communities Between Native and Non-Native Phragmites australis May Depend on Stand Density" published in Ecology and Evolution written by Wesley A. Bickford, Donald R. Zak, Kurt P. Kowalski, and Deborah E. Goldberg.

pydrip - Software to manage and update data for DRIP

This package handles retrieval and preparation of the source data for DRIP. Source data currently come from two sources. The Dam Removal Science Database is distributed by USGS in ScienceBase (https://doi.org/10.5066/P9IGEC9G) and a complete list of dam removals is distributed by American Rivers in Figshare. We provide these efforts as a package in order to support full transparency on what we a

FloPy: Python Package for Creating, Running, and Post-Processing MODFLOW-Based Models

FloPy is a Python package for creating, running, and post-processing MODFLOW-based models.

Coupled Agent-Based and State-and-Transition Simulation Model

Agent-based models (ABMs) and state-and-transition simulation models (STSMs) have proven useful for understanding processes underlying social-ecological systems and evaluating practical questions about how systems might respond to different scenarios. ABMs can simulate a variety of agents (i.e., autonomous units, such as wildlife, people, or viruses); agent characteristics, decision-making, adapti

MODFLOW 6: USGS Modular Hydrologic Model

MODFLOW is a popular open-source groundwater flow model distributed by the U.S. Geological Survey. 

VMT Hydroacoustics Software

The Velocity Mapping Toolbox (VMT) is a Matlab-based software for processing and visualizing ADCP data collected along transects in rivers or other bodies of water. VMT allows rapid processing, visualization, and analysis of a range of ADCP datasets and includes utilities to export ADCP data to files compatible with ArcGIS, Tecplot, and Google Earth.