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Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

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Blooming wildflowers in Pinnacles National Park.

The circular highlights how our research efforts fulfill larger USGS strategic goals.

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Tricolored Heron at Ding Darling National Park

This book is dedicated to those who are or have been associated with the unit program. 

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Yellow-billed Loon on a lake in the northern area of Alaska.

This report provides abstracts of most of the ongoing and recently completed research.

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Filter Total Items: 3751

Ungulate migrations of the western United States, volume 3

Ungulates (hooved mammals) have a broad distribution across the western United States and play an important role in maintaining predator-prey dynamics, affecting vegetation communities, and providing economic benefits to regional communities through tourism and hunting. Throughout the diverse landscapes they occupy, many ungulate populations undertake seasonal migrations to exploit spatially and t
Authors
Matthew Kauffman, Blake Lowrey, Jodi Berg, Scott Bergen, Doug Brimeyer, Patrick Burke, Teal Cufaude, James W. Cain III, Jeffrey Cole, Alyson Courtemanch, Michelle Cowardin, Julie Cunningham, Melia DeVivo, Jennifer Diamond, Orrin Duvuvuei, Julien Fattebert, Joanna R. Ennis, Darby Finley, Jessica Fort, Gary Fralick, Eric Freeman, Jeff Gagnon, Julie Garcia, Emily Gelzer, Morgan Graham, Jacob Gray, Evan Greenspan, L. Embere Hall, Curtis Hendricks, Andy Holland, Brian Holmes, Katey Huggler, Mark A. Hurley, Emily Jeffreys, Aran Johnson, Lee Knox, Kevin Krasnow, Zack Lockyer, Hannah Manninen, Mike McDonald, Jennifer L. McKee, James Meacham, Jerod Merkle, Barb Moore, Tony W. Mong, Clayton Nielsen, Brendan Oates, Kim Olsen, Daniel Olson, Lucas Olson, Matt Pieron, Jake Powell, Annemarie Prince, Kelly Proffitt, Craig Reddell, Corinna Riginos, Robert Ritson, Sierra Robatcek, Shane Roberts, Hall Sawyer, Cody Schroeder, Jessie Shapiro, Nova Simpson, Scott Sprague, Alethea Steingisser, Nicole Tatman, Benjamin Turnock, Cody F. Wallace, Laura Wolf
By
Cooperative Research Units

A practical guide to understanding and validating complex models using data simulations

Biologists routinely fit novel and complex statistical models to push the limits of our understanding. Examples include, but are not limited to, flexible Bayesian approaches (e.g. BUGS, stan), frequentist and likelihood-based approaches (e.g. packages lme4) and machine learning methods.These software and programs afford the user greater control and flexibility in tailoring complex hierarchical mod
Authors
Graziella Vittoria Direnzo, Ephraim Hanks, David A. W. Miller
By
Ecosystems Mission Area, Cooperative Research Units, Eastern Ecological Science Center

A size-based stock assessment model for invasive blue catfish in a Chesapeake Bay sub-estuary during 2001–2016

Stock assessment modeling provides a means to estimate the population dynamics of invasive fishes and may do so despite data limitations. Blue catfish (Ictalurus furcatus) were introduced to the Chesapeake Bay watershed to support recreational fisheries but also consume species of conservation need and economic importance. To assess management tradeoffs, managers need to understand the current sta
Authors
Corbin David Hilling, Yan Jiao, Mary C. Fabrizio, Paul Angermeier, Aaron J. Bunch, Donald J. Orth
By
Ecosystems Mission Area, Cooperative Research Units, Chesapeake Bay Activities, Great Lakes Science Center

Mismatch between temperature and discharge disrupts spawning cues in a fluvial specialist, blue sucker Cycleptus elongatus

Seasonal movements cued by environmental variables are a critical component of riverine fish life history. Life-history events for species such as blue sucker Cycleptus elongatus are likely cued by discharge and temperature and may be disrupted if those life-history events and environmental regimes are mismatched. However, this effect may be dependent upon the habitat occupied when environmental c
Authors
Matthew Ross Acre, Timothy B. Grabowski, Daniel J. Leavitt, Nathan G. Smith, Allison A. Pease, Preston T. Bean, Dakus Geeslin
By
Ecosystems Mission Area, Cooperative Research Units, Columbia Environmental Research Center

The mysterious case of the missing razor clams

Oceans are changing and these changes are affecting animals that live there. Animals respond differently to changes in water temperature, food availability, or contaminants. Those responses can be seen in their genes. Gene transcription is a tool that allows scientists to see the response of an animal’s genes to its environment. We used gene transcription to compare two populations of Pacific razo
Authors
Heather Coletti, Lizabeth Bowen, Brenda Ballachey, Tammy L Wilson, Shannon C. Waters, Michael Booz, Katrina Counihan, Tuula E. Hollmen, Benjamin Pister
By
Ecosystems Mission Area, Cooperative Research Units, Alaska Science Center, Western Ecological Research Center (WERC)

Pleistocene–Holocene vicariance, not Anthropocene landscape change, explains the genetic structure of American black bear (Ursus americanus) populations in the American Southwest and northern Mexico

The phylogeography of the American black bear (Ursus americanus) is characterized by isolation into glacial refugia, followed by population expansion and genetic admixture. Anthropogenic activities, including overharvest, habitat loss, and transportation infrastructure, have also influenced their landscape genetic structure. We describe the genetic structure of the American black bear in the Ameri
Authors
Matthew J. Gould, James W. Cain III, Todd C. Atwood, Larisa E. Harding, Heather E. Johnson, Dave P. Onorato, Frederic S. Winslow, Gary W. Roemer
By
Cooperative Research Units, Alaska Science Center, Western Ecological Research Center (WERC)

Simple statistical models can be sufficient for testing hypotheses with population time series data

Time-series data offer wide-ranging opportunities to test hypotheses about the physical and biological factors that influence species abundances. Although sophisticated models have been developed and applied to analyze abundance time series, they require information about species detectability that is often unavailable. We propose that in many cases, simpler models are adequate for testing hypothe
Authors
Seth J. Wenger, Edward S. Stowe, Keith B. Gido, Mary Freeman, Yoichiro Kanno, Nathan R. Franssen, Julian Olden, N. LeRoy Poff, Annika W. Walters, Phillip M. Bumpers, Meryl C. Mims, Mevin B. Hooten, Xinyi Lu
By
Cooperative Research Units, Eastern Ecological Science Center

Diversity in spawning habitat use among Great Lakes Cisco populations

Cisco (Coregonus artedi) once dominated fish communities in the Laurentian Great Lakes. Restoring the abundance and distribution of this species has emerged as a management priority, yet our understanding of Cisco spawning habitat use is insufficient to characterise habitat needs for these populations and assess whether availability of suitable spawning habitat could be a constraint to recovery. W
Authors
Matthew R. Paufve, Suresh Sethi, Brian C. Weidel, Brian F. Lantry, Daniel Yule, Lars G. Rudstam, Jory L. Jonas, Eric K. Berglund, Michael J. Connerton, Dimitry Gorsky, Matthew Herbert, Jason Smith
By
Ecosystems Mission Area, Cooperative Research Units, Great Lakes Science Center

Estimating Pacific walrus abundance and survival with multievent mark-recapture models

Arctic marine ecosystems are undergoing rapid physical and biological change associated with climate warming and loss of sea ice. Sea ice loss will impact many species through altered spatial and temporal availability of resources. In the Bering and Chukchi Seas, the Pacific walrus Odobenus rosmarus divergens is one species that could be impacted by rapid environmental change, and thus, population

Authors
William S. Beatty, Patrick R. Lemons, Jason P. Everett, Cara J. Lewis, Rebecca L. Taylor, Robert J. Lynn, Suresh A. Sethi, Lori T. Quakenbush, John J. Citta, Michelle Kissling, Natalia Kryukova, John K. Wennburg
By
Ecosystems Mission Area, Cooperative Research Units, Alaska Science Center, Upper Midwest Environmental Sciences Center

Structured decision making

No abstract available.
Authors
Michael C. Runge, J. Barry Grand, Michael S. Mitchell
By
Cooperative Research Units, Eastern Ecological Science Center

Temporal mismatch in space use by a sagebrush obligate species after large-scale wildfire

The increase in size and frequency of wildfires in sagebrush steppe ecosystems has significant impacts on sagebrush obligate species. We modeled seasonal habitat use by female greater sage-grouse (Centrocercus urophasianus) in the Trout Creek Mountains of Oregon and Nevada, USA, to identify landscape characteristics that influenced sage-grouse habitat selection and to create predictive surfaces of
Authors
Elizabeth M. Schuyler, Christian A. Hagen, Christopher R. Anthony, Lee J. Foster, Katie Dugger
By
Ecosystems Mission Area, Cooperative Research Units, Forest and Rangeland Ecosystem Science Center

Exploring metapopulation-scale suppression alternatives for a global invader in a river network experiencing climate change

Invasive species can dramatically alter ecosystems, but eradication is difficult, and suppression is expensive once they are established. Uncertainties in the potential for expansion and impacts by an invader can lead to delayed and inadequate suppression, allowing for establishment. Metapopulation viability models can aid in planning strategies to improve responses to invaders and lessen invasive
Authors
Brian D. Healy, Phaedra E. Budy, Charles Yackulic, Brendan P. Murphy, Robert C. Schelly, Mark C. McKinstry
By
Ecosystems Mission Area, Cooperative Research Units, Southwest Biological Science Center