Andy Ramey, Ph.D.
Through my service at the USGS Alaska Science Center, I support the development and application of genetic and genomic tools to advance molecular ecology research pertaining to wildlife health and disease, population genetics, and environmental DNA. Research in the Molecular Ecology Lab promotes informed decisions regarding the conservation of fish and wildlife resources.
I currently serve as the Director of the Molecular Ecology Lab at the USGS Alaska Science Center. The team of scientists working in the Molecular Ecology Lab develops and applies tools to obtain information on the health, distribution, and genomic characteristics of biological natural resources. This includes collecting and interpreting data on the health and disease status of fish and wildlife, the genetics of animal and plant populations, and the distribution of animals and pathogens using environmental DNA. We use this information to help partners and the public to make informed decisions regarding the conservation of fish and wildlife resources.
Professional Experience
2012 - Present Research Wildlife Geneticist, USGS Alaska Science Center, Alaska
2006 - 2012 Geneticist, USGS Alaska Science Center, Alaska
2003 - 2006 Wildlife Biologist, USGS Alaska Science Center, Alaska
2001 - 2002 Biological Science Technician, Togiak National Wildlife Refuge, Alaska
Education and Certifications
Ph.D. 2015 University of Georgia, Athens, GA Veterinary and Biomedical Sciences
B.S. 2001 Colorado State University, Fort Collins, CO Fishery Biology and Wildlife Biology
Affiliations and Memberships*
Associate Editor: Journal of Wildlife Diseases (2016 - present)
Associate Editor: Ornithology (2020 – present)
Member: American Association for the Advancement of Science, American Ornithological Society (elected), Wildlife Disease Association
Reviewer: more than 35 journal outlets
Honors and Awards
U.S. Fish & Wildlife Service Star Award: 2002
U.S. Geological Survey Star Award: 2003, 2007 - 2009
U.S. Geological Survey performance awards: 2010 - 2022
Science and Products
Genetic evidence supports sporadic and independent introductions of subtype H5 low pathogenic avian influenza A viruses from wild birds to domestic poultry in North America
Evidence for haemosporidian parasite infections in Spectacled Eiders (Somateria fischeri) sampled in Alaska during the breeding season
Acquisition and dissemination of cephalosporin-resistant E. coli in migratory birds sampled at an Alaska landfill as inferred through genomic analysis
Influenza A virus recovery, diversity, and intercontinental exchange: A multi-year assessment of wild bird sampling at Izembek National Wildlife Refuge, Alaska
Antibiotic-resistant Escherichia coli in migratory birds inhabiting remote Alaska
Lessons learned from research and surveillance directed at highly pathogenic influenza A viruses in wild birds inhabiting North America
Vectors, hosts, and control measures for Zika virus in the Americas
Environmental and behavioral changes may influence the exposure of an Arctic apex predator to pathogens and contaminants
Surveillance for highly pathogenic influenza A viruses in California during 2014–2015 provides insights into viral evolutionary pathways and the spatiotemporal extent of viruses in the Pacific Americas Flyway
Maintenance of influenza A viruses and antibody response in mallards (Anas platyrhynchos) sampled during the non-breeding season in Alaska
A genetic signature of the evolution of loss of flight in the Galapagos cormorant
Low-pathogenic influenza A viruses in North American diving ducks contribute to the emergence of a novel highly pathogenic influenza A(H7N8) virus
Science and Products
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Genetic evidence supports sporadic and independent introductions of subtype H5 low pathogenic avian influenza A viruses from wild birds to domestic poultry in North America
Wild bird–origin influenza A viruses (IAVs or avian influenza) have led to sporadic outbreaks among domestic poultry in the United States (US) and Canada, resulting in economic losses through the implementation of costly containment practices and destruction of birds. We used evolutionary analyses of virus sequence data to determine that 78 H5 low pathogenic avian influenza viruses (LPAIVs) isolatAuthorsLei Li, Andrew S. Bowman, Thomas J. DeLiberto, Mary L. Killian, Scott Krauss, Jacqueline M. Nolting, Mia Kim Torchetti, Andrew M. Ramey, Andrew B. Reeves, David E. Stallknecht, Richard J. Webby, Xiu-Feng WanEvidence for haemosporidian parasite infections in Spectacled Eiders (Somateria fischeri) sampled in Alaska during the breeding season
We assessed hematozoa infection in Spectacled Eiders (Somateria fischeri) at two areas in Alaska. No Haemoproteus or Plasmodium species were detected. Leucocytozoon prevalence was 6.5% for adults across sites and 41.9% for juveniles sampled in the Arctic, providing evidence for local transmission. All Leucocytozoon haplotypes were previously detected in waterfowl.AuthorsJohn A. Reed, Matthew G. Sexson, Matthew M. Smith, Joel A. Schmutz, Andrew M. RameyAcquisition and dissemination of cephalosporin-resistant E. coli in migratory birds sampled at an Alaska landfill as inferred through genomic analysis
Antimicrobial resistance (AMR) in bacterial pathogens threatens global health, though the spread of AMR bacteria and AMR genes between humans, animals, and the environment is still largely unknown. Here, we investigated the role of wild birds in the epidemiology of AMR Escherichia coli. Using next-generation sequencing, we characterized cephalosporin-resistant E. coli cultured from sympatric gullsAuthorsChristina Ann Ahlstrom, Jonas Bonnedahl, Hanna Woksepp, Jorge Hernandez, Olsen Bjorn, Andrew M. RameyInfluenza A virus recovery, diversity, and intercontinental exchange: A multi-year assessment of wild bird sampling at Izembek National Wildlife Refuge, Alaska
Western Alaska is a potential point-of-entry for foreign-origin influenza A viruses (IAVs) into North America via migratory birds. We sampled waterfowl and gulls for IAVs at Izembek National Wildlife Refuge (NWR) in western Alaska, USA, during late summer and autumn months of 2011–2015, to evaluate the abundance and diversity of viruses at this site. We collected 4842 samples across five years froAuthorsAndrew B. Reeves, Jeffery S. Hall, Rebecca L. Poulson, Tyrone F. Donnelly, David E. Stallknecht, Andrew M. RameyAntibiotic-resistant Escherichia coli in migratory birds inhabiting remote Alaska
We explored the abundance of antibiotic-resistant Escherichia coli among migratory birds at remote sites in Alaska and used a comparative approach to speculate on plausible explanations for differences in detection among species. At a remote island site, we detected antibiotic-resistant E. coli phenotypes in samples collected from glaucous-winged gulls (Larus glaucescens), a species often associatAuthorsAndrew M. Ramey, Jorge Hernandez, Veronica Tyrlöv, Brian D. Uher-Koch, Joel A. Schmutz, Clara Atterby, Josef D. Järhult, Jonas BonnedahlLessons learned from research and surveillance directed at highly pathogenic influenza A viruses in wild birds inhabiting North America
Following detections of highly pathogenic (HP) influenza A viruses (IAVs) in wild birds inhabiting East Asia after the turn of the millennium, the intensity of sampling of wild birds for IAVs increased throughout much of North America. The objectives for many research and surveillance efforts were directed towards detecting Eurasian origin HP IAVs and understanding the potential of such viruses toAuthorsAndrew M. Ramey, Thomas J. DeLiberto, Yohannes Berhane, David E. Swayne, David E. StallknechtVectors, hosts, and control measures for Zika virus in the Americas
We examine Zika virus (ZIKV) from an ecological perspective and with a focus on the Americas. We assess (1) the role of wildlife in ZIKV disease ecology, (2) how mosquito behavior and biology influence disease dynamics, and (3) how nontarget species and ecosystems may be impacted by vector control programs. Our review suggests that free-ranging, non-human primates may be involved in ZIKV transmissAuthorsSarah J. Thompson, John M. Pearce, Andrew M. RameyEnvironmental and behavioral changes may influence the exposure of an Arctic apex predator to pathogens and contaminants
Recent decline of sea ice habitat has coincided with increased use of land by polar bears (Ursus maritimus) from the southern Beaufort Sea (SB), which may alter the risks of exposure to pathogens and contaminants. We assayed blood samples from SB polar bears to assess prior exposure to the pathogens Brucella spp., Toxoplasma gondii, Coxiella burnetii, Francisella tularensis, and Neospora caninum,AuthorsTodd C. Atwood, Colleen G. Duncan, Kelly A. Patyk, Pauline Nol, Jack Rhyan, Matthew McCollum, Melissa A. McKinney, Andrew M. Ramey, Camila Cerqueira-Cezar, Oliver C H Kwok, Jitender P Dubey, S.G. HennagerSurveillance for highly pathogenic influenza A viruses in California during 2014–2015 provides insights into viral evolutionary pathways and the spatiotemporal extent of viruses in the Pacific Americas Flyway
We used surveillance data collected in California before, concurrent with, and subsequent to an outbreak of highly pathogenic (HP) clade 2.3.4.4 influenza A viruses (IAVs) in 2014–2015 to (i) evaluate IAV prevalence in waterfowl, (ii) assess the evidence for spill-over infections in marine mammals and (iii) genetically characterize low-pathogenic (LP) and HP IAVs to refine inference on the spatiotAuthorsAndrew M. Ramey, Nichola J. Hill, Troy Cline, Magdalena Plancarte, Susan De La Cruz, Michael L. Casazza, Joshua T. Ackerman, Joseph P. Fleskes, T. Winston Vickers, Andrew B. Reeves, Frances Gulland, Christine Fontaine, Diann J. Prosser, Jonathan Runstadler, Walter M. BoyceMaintenance of influenza A viruses and antibody response in mallards (Anas platyrhynchos) sampled during the non-breeding season in Alaska
Prevalence of influenza A virus (IAV) infections in northern-breeding waterfowl has previously been reported to reach an annual peak during late summer or autumn; however, little is known about IAV infection dynamics in waterfowl populations persisting at high-latitude regions such as Alaska, during winter. We captured mallards (Anas platyrhynchos) throughout the non-breeding season (August–April)AuthorsTimothy J. Spivey, Mark S. Lindberg, Brandt W. Meixell, Kyle R. Smith, Wendy Blay Puryear, Kimberly R. Davis, Jonathan A. Runstadler, David E. Stallknecht, Andrew M. RameyA genetic signature of the evolution of loss of flight in the Galapagos cormorant
INTRODUCTIONChanges in the size and proportion of limbs and other structures have played a key role in the evolution of species. One common class of limb modification is recurrent wing reduction and loss of flight in birds. Indeed, Darwin used the occurrence of flightless birds as an argument in favor of his theory of natural selection. Loss of flight has evolved repeatedly and is found among 26 fAuthorsAlejandro Burga, Weiguang Wang, Eyal Ben-David, Paul C. Wolf, Andrew M. Ramey, Claudio Verdugo, Karen Lyons, Patricia G. Parker, Leonid KruglyakLow-pathogenic influenza A viruses in North American diving ducks contribute to the emergence of a novel highly pathogenic influenza A(H7N8) virus
Introductions of low-pathogenic avian influenza (LPAI) viruses of subtypes H5 and H7 into poultry from wild birds have the potential to mutate to highly pathogenic avian influenza (HPAI) viruses, but such viruses' origins are often unclear. In January 2016, a novel H7N8 HPAI virus caused an outbreak in turkeys in Indiana, USA. To determine the virus's origin, we sequenced the genomes of 441 wild-bAuthorsYifei Xu, Andrew M. Ramey, Andrew S. Bowman, Thomas J. DeLiberto, Mary L. Killian, Scott Krauss, Jacqueline M. Nolting, Mia Kim Torchetti, Andrew B. Reeves, Richard J. Webby, David E. Stallknecht, Xiu-Feng Wan - News
*Disclaimer: Listing outside positions with professional scientific organizations on this Staff Profile are for informational purposes only and do not constitute an endorsement of those professional scientific organizations or their activities by the USGS, Department of the Interior, or U.S. Government