Brian Bergamaschi
Dr. Brian Bergamaschi is a research biogeochemist with the USGS California Water Science Center and adjunct Faculty at California State University Sacramento.
Brian received a Ph.D. in Chemical Oceanography from the University of Washington, in Seattle, WA, where he specialized in analyzing the sources and fates of natural organic material in the environment. His main interests are in understanding processes of carbon and nutrient cycling in aquatic environments and related biogeochemical processes. His particular interest is developing methods to quantify interactions between physical and biogeochemical processes. His research ranges in scale from light-mediated molecular transformations, to tidally driven wetland exchange, to effects of changing continental-scale nutrient fluxes on coastal carbon processes. His current projects largely focus on aquatic biogeochemical processes, aquatic habitat quality and carbon cycling in aquatic systems.
Science and Products
Synthesis of data from high-frequency nutrient and associated biogeochemical monitoring for the Sacramento–San Joaquin Delta, northern California
An introduction to high-frequency nutrient and biogeochemical monitoring for the Sacramento–San Joaquin Delta, northern California
A river-scale Lagrangian experiment examining controls on phytoplankton dynamics in the presence and absence of treated wastewater effluent high in ammonium
Effects of solid-liquid separation and storage on monensin attenuation in dairy waste management systems
Using continuous underway isotope measurements to map water residence time in hydrodynamically complex tidal environments
Assessing wildlife benefits and carbon storage from restored and natural coastal marshes in the Nisqually River Delta: Determining marsh net ecosystem carbon balance
Optical properties of dissolved organic matter (DOM): Effects of biological and photolytic degradation
Variation of energy and carbon fluxes from a restored temperate freshwater wetland and implications for carbon market verification protocols
Nutrient dynamics of the Delta: Effects on primary producers
Recent advances in understanding flow dynamics and transport of water-quality constituents in the Sacramento–San Joaquin River Delta
Fecal indicator and pathogenic bacteria and their antibiotic resistance in alluvial groundwater of an irrigated agricultural region with dairies
High-resolution remote sensing of water quality in the San Francisco Bay-Delta Estuary
Non-USGS Publications**
**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.
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Synthesis of data from high-frequency nutrient and associated biogeochemical monitoring for the Sacramento–San Joaquin Delta, northern California
Executive SummaryThis report is the second in a series of three reports that provide information about high-frequency (HF) nutrient and biogeochemical monitoring in the Sacramento–San Joaquin Delta of northern California (Delta). The purpose of this report is to synthesize the data available from a nutrient and water-quality HF (about every 15 minutes) monitoring network operated by the U.S. GeoloAuthorsBryan D. Downing, Brian A. Bergamaschi, Tamara E.C. KrausAn introduction to high-frequency nutrient and biogeochemical monitoring for the Sacramento–San Joaquin Delta, northern California
Executive SummaryThis report is the first in a series of three reports that provide information about high-frequency (HF) nutrient and biogeochemical monitoring in the Sacramento–San Joaquin Delta of northern California (Delta). This first report provides an introduction to the reasons for and fundamental concepts behind collecting HF measurements, and describes the benefits associated with a realAuthorsTamara E.C. Kraus, Brian A. Bergamaschi, Bryan D. DowningA river-scale Lagrangian experiment examining controls on phytoplankton dynamics in the presence and absence of treated wastewater effluent high in ammonium
Phytoplankton are critical component of the food web in most large rivers and estuaries, and thus identifying dominant controls on phytoplankton abundance and species composition is important to scientists, managers, and policymakers. Recent studies from a variety of systems indicate that ammonium ( NH+4) in treated wastewater effluent decreases primary production and alters phytoplankton speciesAuthorsTamara E. C. Kraus, Kurt D. Carpenter, Brian A. Bergamaschi, Alexander Parker, Elizabeth B. Stumpner, Bryan D. Downing, Nicole Travis, Frances Wilkerson, Carol Kendall, Timothy MussenEffects of solid-liquid separation and storage on monensin attenuation in dairy waste management systems
Environmental release of veterinary pharmaceuticals has been of regulatory concern for more than a decade. Monensin is a feed additive antibiotic that is prevalent throughout the dairy industry and is excreted in dairy waste. This study investigates the potential of dairy waste management practices to alter the amount of monensin available for release into the environment. Analysis of wastewater aAuthorsSarah C. Hafner, Naoko Watanabe, Thomas Harter, Brian A. Bergamaschi, Sanjai J. ParikhUsing continuous underway isotope measurements to map water residence time in hydrodynamically complex tidal environments
Stable isotopes present in water (δ2H, δ18O) have been used extensively to evaluate hydrological processes on the basis of parameters such as evaporation, precipitation, mixing, and residence time. In estuarine aquatic habitats, residence time (τ) is a major driver of biogeochemical processes, affecting trophic subsidies and conditions in fish-spawning habitats. But τ is highly variable in estuariAuthorsBryan D. Downing, Brian A. Bergamaschi, Carol Kendall, Tamara E. C. Kraus, Kate J. Dennis, Jeffery A. Carter, Travis von DessonneckAssessing wildlife benefits and carbon storage from restored and natural coastal marshes in the Nisqually River Delta: Determining marsh net ecosystem carbon balance
Working in partnership since 1996, the U.S. Fish and Wildlife Service and the Nisqually Indian Tribe have restored 902 acres of tidally influenced coastal marsh in the Nisqually River Delta (NRD), making it the largest estuary-restoration project in the Pacific Northwest to date. Marsh restoration increases the capacity of the estuary to support a diversity of wildlife species. Restoration also inAuthorsFrank Anderson, Brian A. Bergamaschi, Lisamarie Windham-Myers, Isa Woo, Susan De La Cruz, Judith Z. Drexler, Kristin Byrd, Karen M. ThorneOptical properties of dissolved organic matter (DOM): Effects of biological and photolytic degradation
Advances in spectroscopic techniques have led to an increase in the use of optical properties (absorbance and fluorescence) to assess dissolved organic matter (DOM) composition and infer sources and processing. However, little information is available to assess the impact of biological and photolytic processing on the optical properties of original DOM source materials. We measured changes in commAuthorsAngela Hansen, Tamara E. C. Kraus, Brian Pellerin, Jacob Fleck, Bryan D. Downing, Brian A. BergamaschiVariation of energy and carbon fluxes from a restored temperate freshwater wetland and implications for carbon market verification protocols
Temperate freshwater wetlands are among the most productive terrestrial ecosystems, stimulating interest in using restored wetlands as biological carbon sequestration projects for greenhouse gas reduction programs. In this study, we used the eddy covariance technique to measure surface energy carbon fluxes from a constructed, impounded freshwater wetland during two annual periods that were 8 yearsAuthorsFrank Anderson, Brian A. Bergamaschi, Cove Sturtevant, Sarah Knox, Lauren Hastings, Lisamarie Windham-Myers, Matteo Detto, Erin L. Hestir, Judith Z. Drexler, Robin L. Miller, Jaclyn Matthes, Joseph Verfaillie, Dennis Baldocchi, Richard L. Snyder, Roger FujiiNutrient dynamics of the Delta: Effects on primary producers
Increasing clarity of Delta waters, the emergence of harmful algal blooms, the proliferation of aquatic water weeds, and the altered food web of the Delta have brought nutrient dynamics to the forefront. This paper focuses on the sources of nutrients, the transformation and uptake of nutrients, and the links of nutrients to primary producers. The largest loads of nutrients to the Delta come from tAuthorsClifford N. Dahm, Alexander E. Parker, Anne E. Adelson, Mairgareth A. Christman, Brian A. BergamaschiRecent advances in understanding flow dynamics and transport of water-quality constituents in the Sacramento–San Joaquin River Delta
This paper, part of the collection of research comprising the State of Bay–Delta Science 2016, describes advances during the past decade in understanding flow dynamics and how water-quality constituents move within California’s Sacramento– San Joaquin River Delta (Delta). Water-quality constituents include salinity, heat, oxygen, nutrients, contaminants, organic particles, and inorganic particles.AuthorsDavid H. Schoellhamer, Scott A. Wright, Stephen G. Monismith, Brian A. BergamaschiFecal indicator and pathogenic bacteria and their antibiotic resistance in alluvial groundwater of an irrigated agricultural region with dairies
Surveys of microbiological groundwater quality were conducted in a region with intensive animal agriculture in California, USA. The survey included monitoring and domestic wells in eight concentrated animal feeding operations (CAFOs) and 200 small (domestic and community supply district) supply wells across the region. Campylobacter was not detected in groundwater, whereas Escherichia coli O157:H7AuthorsXunde Li, Edward R. Atwill, Elizabeth Antaki, Olin Applegate, Brian A. Bergamaschi, Ronald F. Bond, Jennifer T. Chase, Katherine M Ransom, William B. Samuels, Naoko Watanabe, Thomas HarterHigh-resolution remote sensing of water quality in the San Francisco Bay-Delta Estuary
The San Francisco Bay–Delta Estuary watershed is a major source of freshwater for California and a profoundly human-impacted environment. The water quality monitoring that is critical to the management of this important water resource and ecosystem relies primarily on a system of fixed water-quality monitoring stations, but the limited spatial coverage often hinders understanding. Here, we show hoAuthorsCédric G. Fichot, Bryan D. Downing, Brian A. Bergamaschi, Lisamarie Windham-Myers, Mark C. Marvin-DiPasquale, David R. Thompson, Michelle M. GierachNon-USGS Publications**
Bergamaschi, B.A. and Hedges, J.I. (1995) A Multichambered Apparatus for HF Solvolysis Experiments - Reaction of Cellulose HF Solvolysis Products with Acetic-Acid and Acetic-Anhydride. Carbohydrate Research 267, 115-126. https://doi.org/10.1016/0008-6215(94)00279-OHedges, J.I., Bergamaschi, B.A. and Benner, R. (1994) Comparative Analyses of DOC and DON in Natural Water - Erratum (Vol 41, Pg 121, 1989). Marine Chemistry 46, 407-408. https://doi.org/10.1016/0304-4203(94)90035-3Hedges, J.I., Bergamaschi, B.A. and Benner, R. (1993) Comparative Analyses of DOC and DON in Natural Water. Marine Chemistry 41, 121-134. https://doi.org/10.1016/0304-4203(93)90110-AHopkinson, C., Cifuentes, L., Burdige, D., Fitzwater, S., Hansell, D., Henrichs, S., Kahler, P., Koike, I., Walsh, T. and Bergamaschi, B. (1993) Measurement of Dissolved Organic Carbon and Nitrogen in Natural Waters - DON Subgroup Report. Marine Chemistry 41, 23-36. https://doi.org/10.1016/0304-4203(93)90103-UHedges, J.I. and Bergamaschi, B.A. (1992) Seawater Carbon Measurement. Nature 359, 202-202. https://doi.org/DOI 10.1038/359202a0**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.
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