Clint Muhlfeld, Ph.D.
I am a Research Aquatic Ecologist for the USGS Northern Rocky Mountain Science Center stationed in Glacier National Park and Associate Research Professor at the University of Montana’s Flathead Lake Biological Station.
Research interests
My general research interests encompass the fields of aquatic ecology, fisheries biology, and conservation biology. My research goal is to understand how aquatic species interact with physical and biological templates over space and time to inform conservation and management. Specifically, my applied research focuses on assessing how human stressors – invasive species, habitat modification, and climate change – influence native salmonids and rare alpine macroinvertebrates in the Rocky Mountains of United States and Canada.
My research spans a range of scientific and conservation issues from examining evolutionary and ecological impacts of invasive species on native fishes, assessing life history and genetic diversity of native salmonids, assessing the status of threatened freshwater species, investigating the impacts of dams and barriers on aquatic species and ecosystems, developing quantitative models (e.g., stream temperature, instream flow/habitat, bioenergetics, riverscape connectivity, population viability) to predict species’ responses to environmental change, to understanding and predicting the impacts of climate change on freshwater species and ecosystems.
I particularly enjoy collaboration and multidisciplinary research, and advising and educating graduate students working on freshwater ecology and conservation biology projects. Currently, I actively participate on several regional, national, and international science teams that address natural resource issues facing aquatic ecosystems. My hope is that the ecological integrity of aquatic ecosystems will be conserved for future generations through research-informed management and education.
Education and Certifications
Ph.D. 2008. Fish and Wildlife Biology, Montana State University, Bozeman
M.S. 1999. Fishery Resources, University of Idaho, Moscow
B.S. 1994. Aquatic Biology, University of Montana, Missoula; University of Maine, Orono
Affiliations and Memberships*
Flathead Lake Biological Station, University of Montana
Science and Products
Genetic diversity is related to climatic variation and vulnerability in threatened bull trout
Landscape community genomics: understanding eco-evolutionary processes in complex environments
Genomics and introgression: Discovery and mapping of thousands of species-diagnostic SNPs using RAD sequencing
Status and conservation of interior Redband Trout in the western United States
Multiscale hydrogeomorphic influences on bull trout (Salvelinus confluentus) spawning habitat
Applications of genetic data to improve management and conservation of river fishes and their habitats
Dispersal and selection mediate hybridization between a native and invasive species
Climate-induced range contraction of a rare alpine aquatic invertebrate
Combining demographic and genetic factors to assess population vulnerability in stream species
Climate change and the Rocky Mountains
Quantifying the effectiveness of conservation measures to control the spread of anthropogenic hybridization in stream salmonids: A climate adaptation case study
Invasive hybridization in a threatened species is accelerated by climate change
Non-USGS Publications**
**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.
Science and Products
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Genetic diversity is related to climatic variation and vulnerability in threatened bull trout
Understanding how climatic variation influences ecological and evolutionary processes is crucial for informed conservation decision-making. Nevertheless, few studies have measured how climatic variation influences genetic diversity within populations or how genetic diversity is distributed across space relative to future climatic stress. Here, we tested whether patterns of genetic diversity (allelAuthorsRyan Kovach, Clint C. Muhlfeld, Alisa A. Wade, Brian K. Hand, Diane C. Whited, Patrick W. DeHaan, Robert K. Al-Chokhachy, Gordon LuikartLandscape community genomics: understanding eco-evolutionary processes in complex environments
Extrinsic factors influencing evolutionary processes are often categorically lumped into interactions that are environmentally (e.g., climate, landscape) or community-driven, with little consideration of the overlap or influence of one on the other. However, genomic variation is strongly influenced by complex and dynamic interactions between environmental and community effects. Failure to considerAuthorsBrian K. Hand, Winsor H. Lowe, Ryan P. Kovach, Clint C. Muhlfeld, Gordon LuikartGenomics and introgression: Discovery and mapping of thousands of species-diagnostic SNPs using RAD sequencing
Invasive hybridization and introgression pose a serious threat to the persistence of many native species. Understanding the effects of hybridization on native populations (e.g., fitness consequences) requires numerous species-diagnostic loci distributed genome-wide. Here we used RAD sequencing to discover thousands of single-nucleotide polymorphisms (SNPs) that are diagnostic between rainbow troutAuthorsBrian K. Hand, Tyler D Hether, Ryan P. Kovach, Clint C. Muhlfeld, Stephen J. Amish, Matthew C. Boyer, Sean M. O’Rourke, Michael R. Miller, Winsor H. Lowe, Paul A. Hohenlohe, Gordon LuikartStatus and conservation of interior Redband Trout in the western United States
In this article we describe the current status and conservation of interior (potamodromous) Redband Trout Oncorhynchus mykiss sspp. throughout its range in the western United States using extant data and expert opinion provided by fish managers. Redband Trout historically occupied 60,295 km of stream habitat and 152 natural lakes. Currently, Redband Trout occupy 25,417 km of stream habitat (42% ofAuthorsClint C. Muhlfeld, Shannon E. Albeke, Stephanie L Gunckel, Benjamin J Writer, Bradley B. Shepard, Bruce E MayMultiscale hydrogeomorphic influences on bull trout (Salvelinus confluentus) spawning habitat
We investigated multiscale hydrogeomorphic influences on the distribution and abundance of bull trout (Salvelinus confluentus) spawning in snowmelt-dominated streams of the upper Flathead River basin, northwestern Montana. Within our study reaches, bull trout tended to spawn in the finest available gravel substrates. Analysis of the mobility of these substrates, based on one-dimensional hydraulicAuthorsJared R Bean, Andrew C. Wilcox, William W. Woessner, Clint C. MuhlfeldApplications of genetic data to improve management and conservation of river fishes and their habitats
Environmental variation and landscape features affect ecological processes in fluvial systems; however, assessing effects at management-relevant temporal and spatial scales is challenging. Genetic data can be used with landscape models and traditional ecological assessment data to identify biodiversity hotspots, predict ecosystem responses to anthropogenic effects, and detect impairments to underlAuthorsKim T. Scribner, Winsor H. Lowe, Erin L. Landguth, Gordon Luikart, Dana M. Infante, Gary Whelan, Clint C. MuhlfeldDispersal and selection mediate hybridization between a native and invasive species
Hybridization between native and non-native species has serious biological consequences, but our understanding of how dispersal and selection interact to influence invasive hybridization is limited. Here, we document the spread of genetic introgression between a native (Oncorhynchus clarkii) and invasive (Oncorhynchus mykiss) trout, and identify the mechanisms influencing genetic admixture. In twoAuthorsRyan P. Kovach, Clint C. Muhlfeld, Matthew C. Boyer, Winsor H. Lowe, Fred W. Allendorf, Gordon LuikartClimate-induced range contraction of a rare alpine aquatic invertebrate
Climate warming poses a serious threat to alpine-restricted species worldwide, yet few studies have empirically documented climate-induced changes in distributions. The rare stonefly, Zapada glacier (Baumann and Gaufin), endemic to alpine streams of Glacier National Park (GNP), Montana, was recently petitioned for listing under the US Endangered Species Act because of climate-change-induced glacieAuthorsJ. Joseph Giersch, Steve Jordan, Gordon Luikart, Leslie A. Jones, F. Richard Hauer, Clint C. MuhlfeldCombining demographic and genetic factors to assess population vulnerability in stream species
Accelerating climate change and other cumulative stressors create an urgent need to understand the influence of environmental variation and landscape features on the connectivity and vulnerability of freshwater species. Here, we introduce a novel modeling framework for aquatic systems that integrates spatially explicit, individual‐based, demographic and genetic (demogenetic) assessments with envirAuthorsErin L. Landguth, Clint C. Muhlfeld, Leslie W. Jones, Robin S. Waples, Diane Whited, Winsor H. Lowe, John Lucotch, Helen Neville, Gordon LuikartClimate change and the Rocky Mountains
Rural landscapes in the Andes are characterized by an impressive diversity of natural environments and by multiple resource assets. This is particularly the case in the tropical realm where the ecological altitudinal zones of the tierra caliente, the tierra templada, the tierra fria and the tierra heladaoffer a remarkable range of agricultural potential. This is complemented by a multitude of topoAuthorsJames M. Byrne, Daniel B. Fagre, Ryan MacDonaldQuantifying the effectiveness of conservation measures to control the spread of anthropogenic hybridization in stream salmonids: A climate adaptation case study
Quantifying the effectiveness of management actions to mitigate the effects of changing climatic conditions (i.e., climate adaptation) can be difficult, yet critical for conservation. We used population genetic data from 1984 to 2011 to assess the degree to which ambient climatic conditions and targeted suppression of sources of nonnative Rainbow Trout Oncorhynchus mykiss have influenced the spreaAuthorsRobert K. Al-Chokhachy, Clint C. Muhlfeld, Matthew Boyer, Leslie A. Jones, Amber Steed, Jeffrey L. KershnerInvasive hybridization in a threatened species is accelerated by climate change
Climate change will decrease worldwide biodiversity through a number of potential pathways1, including invasive hybridization2 (cross-breeding between invasive and native species). How climate warming influences the spread of hybridization and loss of native genomes poses difficult ecological and evolutionary questions with little empirical information to guide conservation management decisions3.AuthorsClint C. Muhlfeld, Ryan P. Kovach, Leslie A. Jones, Robert K. Al-Chokhachy, Matthew C. Boyer, Robb F. Leary, Winsor H. Lowe, Gordon Luikart, Fred W. AllendorfNon-USGS Publications**
Muhlfeld, Clint C., Thomas E. McMahon, and Durae Belcer. 2009. Spatial and temporal dynamics of spawning between native westslope cutthroat trout (Oncorhynchus clarkii lewisi), introduced rainbow trout (O. mykiss), and their hybrids. Canadian Journal of Fisheries and Aquatic Sciences 66:1153-1168.Muhlfeld, Clint C., Thomas E. McMahon, Matthew C. Boyer, and Robert E. Gresswell. 2009. Local-habitat, watershed, and biotic factors in the spread of hybridization between native westslope cutthroat trout and introduced rainbow trout. Transactions of the American Fisheries Society 138:1036-1051.Boyer, Matthew C., Clint C. Muhlfeld, and Fred Allendorf. 2008. Rainbow trout invasion and the spread of hybridization with westslope cutthroat trout. Canadian Journal of Fisheries and Aquatic Sciences 65:658-669.Muhlfeld, Clint C., David H. Bennett, Kirk Steinhorst, Brian Marotz, and Matthew C. Boyer. 2008. Using bioenergetics modeling to estimate consumption of native juvenile salmonids by nonnative northern pike in the upper Flathead River system, Montana. North American Journal of Fisheries Management 28:636-648.**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.
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*Disclaimer: Listing outside positions with professional scientific organizations on this Staff Profile are for informational purposes only and do not constitute an endorsement of those professional scientific organizations or their activities by the USGS, Department of the Interior, or U.S. Government