Quasem, I., A. N. Achille, B. A. Caddick, T. A. Carter, C. Daniels, J. A. Delaney, V. Delic, K. A. Denton, M. C. Duran, M. K. Fatica, C. M. Ference, J. P. Galkiewicz, A. M. Garcia, J. D. Hendrick, S. A. Horton, M. S. Kun, P. W. Koch, T. M. Lee, C. R. McCabe, S. McHale, L. D. McDaniel, D. M. Menning, K. J. Menning, H. Mirzaei-Souderjani, S. Mostajabian, D. A. Nicholson, C. K. Nugent, N. P. Osman, D. I. Pappas, A. M. Rocha, K. Rosario, H. Rubelmann, J. A. Schwartz, K. W. Seeley, C. M. Staley, E. M. Wallace, T. M. Wong, B. L. Zielinski, T. E. Hanson, and K. M. Scott. 2017. Peculiar citric acid cycle of hydrothermal vent chemolithoautotroph Hydrogenovibrio crunogenus, and insights into carbon metabolism by obligate autotrophs. FEMS Microbiology Letters 364(14):fnx148. doi:10.1093/femsle/fnx148
Damian M Menning, Ph.D.
Genetics, Environmental DNA (eDNA), Python/Biopython scripting, Molecular ecology, Bioinformatics
Biography
Education
Ph.D. 2014 University of South Florida, Tampa FL Cell and Molecular Biology
B.S. 2006 Texas A&M University at Galveston, Galveston TX Marine Biology
Professional Experience
2015 - Present Geneticist, USGS, Alaska Science Center, Anchorage, Alaska
Science and Products
Date published: June 20, 2017
Status: Active Molecular Ecology Laboratory in Alaska
The Molecular Ecology Laboratory at the USGS Alaska Science Center provides genetic capabilities for the wide range of science needs of the Department of the Interior nationally as well as on trust species and resources in Alaska.
Contacts: Sandra L Talbot, Ph.D., John M Pearce, Ph.D.
Year Published: 2018
Using redundant primer sets to detect multiple native Alaskan fish species from environmental DNA
Accurate and timely data regarding freshwater fish communities is important for informed decision-making by local, state, tribal, and federal land and resource managers; however, conducting traditional gear-based fish surveys can be an expensive and time-consuming process, particularly in remote areas, like those that characterize much of Alaska....
Menning, Damian M.; Simmons, Trey; Talbot, Sandra L.Attribution: Alaska Science Center, Ecosystems
Year Published: 2018
Museum metabarcoding: a novel method revealing gut helminth communities of small mammals across space and time
Natural history collections spanning multiple decades provide fundamental historical baselines to measure and understand changing biodiversity. New technologies such as next generation DNA sequencing (NGS) have considerably increased the potential of museum specimens to address significant questions regarding the impact of environmental changes on...
Greiman, Stephen E.; Cook, Joseph A.; Tkach, Vasyl V.; Hoberg, Eric P.; Menning, Damian M.; Hope, Andrew G.; Sonsthagen, Sarah A.; Talbot, Sandra L.Attribution: Alaska Science Center, Ecosystems
View Citation
Greiman, S.E., Cook, J.A., Tkachc, V.V., Hobergb, E.P, Menning, D.M., Hope A.G., Sonsthagen, S.A., Talbot, S.L., 2018. Museum metabarcoding: a novel method revealing gut helminth communities of small mammals across space and time. International Journal for Parasitology. https://doi.org/10.1016/j.ijpara.2018.08.001
Year Published: 2018
A transcriptome resource for the Arctic Cod (Boreogadus saida)
Arctic Cod (Boreogadus saida) serve as an important link in Arctic food webs and are thus considered an important species for environmental monitoring. RNA-Seq was conducted on samples from wild-collected individuals representing various age classes and tissue types to obtain as complete a transcriptome as possible on an Illumina MiSeq, which...
Wilson, Robert E.; Menning, Damian M.; Wedemeyer, Kate; Talbot, Sandra L.Attribution: Alaska Science Center, Ecosystems
View Citation
Wilson, R.E., D.M. Menning, K. Wedemeyer, S.L. Talbot. 2018. A transcriptome resource for the Arctic Cod (Boreogadus saida), Marine Genomics, https://doi.org/10.1016/j.margen.2018.03.003
Year Published: 2017
Genomics of Arctic cod
The Arctic cod (Boreogadus saida) is an abundant marine fish that plays a vital role in the marine food web. To better understand the population genetic structure and the role of natural selection acting on the maternally-inherited mitochondrial genome (mitogenome), a molecule often associated with adaptations to temperature, we analyzed genetic...
Wilson, Robert E.; Sage, George K.; Sonsthagen, Sarah A.; Gravley, Megan C.; Menning, Damian M.; Talbot, Sandra L.Attribution: Alaska Science Center, Ecosystems
View Citation
Wilson, R.E, G.K. Sage, S.A. Sonsthagen, M.C. Gravley, D.M. Menning, and S.L. Talbot. 2017. Genomics of Arctic Cod. Anchorage, AK: US Dept. of the Interior, Bureau of Ocean Energy Management, Alaska OCS Region. OCS Study BOEM 2017-066. 92pp. https://www.boem.gov/Alaska-Reports-2017/
Pre-USGS Publications
Menning, D. M., W. A. Carraher-Stross, E. D. Graham, D. N. Thomas, A. R. Phillips, R. J. Scharping, and J. R. Garey. 2017. Aquifer Discharge Drives Microbial Community Change in Karst Estuaries. Estuaries and Coasts 41(2):430-443. doi:10.1007/s12237-017-0281-7
Menning, D. M., J. G. Wynn, and J. R. Garey. 2015. Karst estuaries are governed by interactions between inland hydrological conditions and sea level. Journal of Hydrology 527:718-733. doi:10.1016/j.jhydrol.2015.05.021
Menning, D. M., L. M. Boop, E. D. Graham, and J. R. Garey. 2014. Molecular analyses of microbial abundance and diversity in the water column of anchialine caves in Mallorca, Spain. International Journal of Speleology 43:217-226. doi:10.5038/1827-806X.43.2.9
Garey, J. R. and D. M. Menning. 2012. The dynamics of community structure within a submarine coastal spring with an anchialine source. Natura Croatica 21(1):43-46.
Date published: August 6, 2018
Python scripts for Bioinformatics, 2017
Bioinformatics software repository containing python scripts intended for search and download of genetic information obtained from GenBank NCBI genetics data resources in support of developing PCR primers, targeted genetic databases, genetic analyses, and data interpretation. Includes multiple functions to streamline this process.
Attribution: Alaska Science Center