Hon Ip
Hon Ip is a Diagnostic and Research Virologist at the National Wildlife Health Center.
As a Diagnostic and Research Virologist, I am interested in the emergence and spread of novel, introduced, and endemic viral diseases of wildlife. For example, through the National Wildlife Health Center’s long-standing program to investigate wildlife mortality events in the United States, our Diagnostic Virology Laboratory was first to detect introductions of West Nile Virus (in 1999) and Highly Pathogenic Avian Influenza H5N8 (in 2014). Both of these introductions resulted in large-scale monitoring efforts that provided real-time and actionable intelligence to state and federal partners for disease response. We have also investigated periodic recurrence of Newcastle Disease in cormorants, geographic expansion of Eurasian collared doves and associated spread of pigeon paramyxovirus, and applied phylogenetic approaches to understand the diversity and transmission of viral diseases on the landscape. Since 2008 we have been studying viruses in North American bats, including coronaviruses. Following the recent emergence of COVID-19, this work provides a highly relevant framework for investigating possible impacts of the SARS-CoV-2 virus on native, North American bat species, and for more broadly characterizing the diversity of coronaviruses in North American wildlife.
Professional Experience
Diagnostic and Research Virologist at the National Wildlife Health Center
Education and Certifications
Ph. D. Molecular Parasitology. The Rockefeller University, New York, NY.
M. Sc. Microbiology and Parasitology. University of Toronto, Ontario, Canada.
B. Sc. Microbiology and Parasitology. University of Toronto, Ontario, Canada.
Affiliations and Memberships*
Honorary Associate Fellow. Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison.
Adjunct Assistant Professor. Department of Population Health Sciences, School of Medicine and Public Health, University of Wisconsin-Madison.
Science and Products
Lethal infection of wild raptors with highly pathogenic avian influenza H5N8 and H5N2 viruses in the USA, 2014–15
Inferring epidemiologic dynamics from viral evolution: 2014–2015 Eurasian/North American highly pathogenic avian influenza viruses exceed transmission threshold, R0 = 1, in wild birds and poultry in North America
Experimental infection of common eider ducklings with Wellfleet Bay virus, a newly characterized orthomyxovirus
Natural infections with pigeon paramyxovirus serotype 1: Pathologic changes in Eurasian collared-doves (Streptopelia decaocto) and rock pigeons (Columba livia) in the United States
Identification of two novel reassortant avian influenza a (H5N6) viruses in whooper swans in Korea, 2016
Detection of spring viraemia of carp virus in imported amphibians reveals an unanticipated foreign animal disease threat
H9N2 influenza A virus isolated from a Greater White-fronted wild goose (Anser albifrons) in Alaska has a mutation in the PB2 gene, which is associated with pathogenicity in human pandemic 2009 H1N1
U.S. Geological Survey science strategy for highly pathogenic avian influenza in wildlife and the environment (2016–2020)
Widespread detection of highly pathogenic H5 influenza viruses in wild birds from the Pacific Flyway of the United States
Experimental challenge of a peridomestic avian species, European Starlings (Sturnus vulgaris), with novel Influenza A H7N9 virus from China
High rates of detection of Clade 2.3.4.4 Highly Pathogenic Avian Influenza H5 viruses in wild birds in the Pacific Northwest during the winter of 2014-2015
Surveillance for highly pathogenic avian influenza virus in wild birds during outbreaks in domestic poultry, Minnesota, 2015
Science and Products
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Lethal infection of wild raptors with highly pathogenic avian influenza H5N8 and H5N2 viruses in the USA, 2014–15
An outbreak of highly pathogenic avian influenza (HPAI) led to heavy losses of poultry in commercial farms in North America in 2014–15. Enhanced surveillance by virologists and pathologists at the US Geological Survey National Wildlife Health Center and its partners resulted in the identification of lethal infections with clade 2.3.4.4 subgroup icA2 H5N8 and novel reassortant H5N2 viruses in diverAuthorsSusan Knowles, Valerie I. Shearn-Bochsler, Hon S. IpInferring epidemiologic dynamics from viral evolution: 2014–2015 Eurasian/North American highly pathogenic avian influenza viruses exceed transmission threshold, R0 = 1, in wild birds and poultry in North America
Highly pathogenic avian influenza virus (HPAIV) is a multihost pathogen with lineages that pose health risks for domestic birds, wild birds, and humans. One mechanism of intercontinental HPAIV spread is through wild bird reservoirs, and wild birds were the likely sources of a Eurasian (EA) lineage HPAIV into North America in 2014. The introduction resulted in several reassortment events with NorthAuthorsDaniel R. Grear, Jeffrey S. Hall, Robert J. Dusek, Hon S. IpExperimental infection of common eider ducklings with Wellfleet Bay virus, a newly characterized orthomyxovirus
Wellfleet Bay virus (WFBV), a novel orthomyxovirus in the genus Quaranjavirus, was first isolated in 2006 from carcasses of common eider (Somateria mollissima) during a mortality event in Wellfleet Bay (Barnstable County, Massachusetts, USA) and has since been repeatedly isolated during recurrent mortality events in this location. Hepatic, pancreatic, splenic, and intestinal necrosis were observedAuthorsValerie I. Shearn-Bochsler, Hon S. Ip, Anne Ballmann, Jeffrey S. Hall, Andrew B. Allison, Jennifer R. Ballard, Julie C. Ellis, Robert Cook, Samantha E. J. Gibbs, Chris P. DwyerNatural infections with pigeon paramyxovirus serotype 1: Pathologic changes in Eurasian collared-doves (Streptopelia decaocto) and rock pigeons (Columba livia) in the United States
Pigeon paramyxovirus serotype 1 (PPMV-1) is a globally distributed, virulent member of the avian paramyxovirus serotype 1 serogroup that causes mortality in columbiformes and poultry. Following introduction into the United States in the mid-1980s, PPMV-1 rapidly spread causing numerous mortality events in Eurasian collared-doves (Streptopelia decaocto) (ECDOs) and rock pigeons (Columba livia) (ROPAuthorsMarcos Isidoro Ayza, C.L. Afonso, J.B. Stanton, Susan Knowles, Hon S. Ip, C. LeAnn White, Heather Fenton, M.G. Ruder, A. C. Dolinski, Julia S. LanktonIdentification of two novel reassortant avian influenza a (H5N6) viruses in whooper swans in Korea, 2016
BackgroundOn November 20, 2016 two novel strains of H5N6 highly pathogenic avian influenza virus (HPAIVs) were isolated from three whooper swans (Cygnus cygnus) at Gangjin Bay in South Jeolla province, South Korea. Identification of HPAIVs in wild birds is significant as there is a potential risk of transmission of these viruses to poultry and humans.ResultsPhylogenetic analysis revealed that GangAuthorsJipseol Jeong, Chanjin Woo, Hon S. Ip, Injung An, Youngsik Kim, Kwanghee Lee, Seong-Deok Jo, Kidong Son, Saemi Lee, Jae-Ku Oem, Seung-Jun Wang, Yongkwan Kim, Jeonghwa Shin, Jonathan M. Sleeman, Weonhwa JheongDetection of spring viraemia of carp virus in imported amphibians reveals an unanticipated foreign animal disease threat
Global translocation of plants and animals is a well-recognized mechanism for introduction of pathogens into new regions. To mitigate this risk, various tools such as preshipment health certificates, quarantines, screening for specific disease agents and outright bans have been implemented. However, such measures only target known infectious agents and their hosts and may fail to prevent translocaAuthorsHon S. Ip, Jeffrey M. Lorch, David S. BlehertH9N2 influenza A virus isolated from a Greater White-fronted wild goose (Anser albifrons) in Alaska has a mutation in the PB2 gene, which is associated with pathogenicity in human pandemic 2009 H1N1
We report here the genomic sequence of an H9N2 influenza A virus [A/greater white-fronted goose/Alaska/81081/2008 (H9N2)]. This virus shares ≥99.8% identity with a previously reported virus. Both strains contain a G590S mutation in the polymerase basic 2 (PB2) gene, which is a pathogenicity marker in the pandemic 2009 H1N1 virus when combined with R591.AuthorsAndrew B. Reeves, Hon S. IpU.S. Geological Survey science strategy for highly pathogenic avian influenza in wildlife and the environment (2016–2020)
IntroductionThrough the Science Strategy for Highly Pathogenic Avian Influenza (HPAI) in Wildlife and the Environment, the USGS will assess avian influenza (AI) dynamics in an ecological context to inform decisions made by resource managers and policymakers from the local to national level. Through collection of unbiased scientific information on the ecology of AI viruses and wildlife hosts in a cAuthorsM. Camille Harris, John M. Pearce, Diann J. Prosser, C. LeAnn White, A. Keith Miles, Jonathan M. Sleeman, Christopher J. Brand, James P. Cronin, Susan De La Cruz, Christine L. Densmore, Thomas W. Doyle, Robert J. Dusek, Joseph P. Fleskes, Paul L. Flint, Gerald F. Guala, Jeffrey S. Hall, Laura E. Hubbard, Randall J. Hunt, Hon S. Ip, Rachel A. Katz, Kevin W. Laurent, Mark P. Miller, Mark D. Munn, Andrew M. Ramey, Kevin D. Richards, Robin E. Russell, Joel P. Stokdyk, John Y. Takekawa, Daniel P. WalshWidespread detection of highly pathogenic H5 influenza viruses in wild birds from the Pacific Flyway of the United States
A novel highly pathogenic avian influenza virus belonging to the H5 clade 2.3.4.4 variant viruses was detected in North America in late 2014. Motivated by the identification of these viruses in domestic poultry in Canada, an intensive study was initiated to conduct highly pathogenic avian influenza surveillance in wild birds in the Pacific Flyway of the United States. A total of 4,729 hunter-harveAuthorsS.N. Bevins, Robert J. Dusek, C. LeAnn White, Thomas Gidlewski, B. Bodenstein, Kristin G. Mansfield, Paul DeBruyn, Donald K. Kraege, E. L. Rowan, Colin Gillin, B. Thomas, S. Chandler, J. Baroch, B. Schmit, M. J. Grady, R. S. Miller, M.L. Drew, S. Stopak, B. Zscheile, J. Bennett, J. Sengl, Caroline Brady, Hon S. Ip, Erica Spackman, M. L. Killian, Mia Kim Torchetti, Jonathan M. Sleeman, T.J. DeLibertoExperimental challenge of a peridomestic avian species, European Starlings (Sturnus vulgaris), with novel Influenza A H7N9 virus from China
In 2013 a novel avian influenza H7N9 virus was isolated from several critically ill patients in China, and infection with this virus has since caused more than 200 human deaths. Live poultry markets are the likely locations of virus exposure to humans. Peridomestic avian species also may play important roles in the transmission and maintenance of H7N9 at live poultry markets. We experimentally chaAuthorsJeffrey S. Hall, Hon S. Ip, Joshua L. Teslaa, Sean W. Nashold, Robert J. DusekHigh rates of detection of Clade 2.3.4.4 Highly Pathogenic Avian Influenza H5 viruses in wild birds in the Pacific Northwest during the winter of 2014-2015
In 2014, Clade 2.3.4.4 H5N8 highly pathogenic avian influenza (HPAI) viruses spread across the Republic of Korea and ultimately were reported in China, Japan, Russia and Europe. Mortality associated with a reassortant HPAI H5N2 virus was detected in poultry farms in Western Canada at the end of November. The same strain (with identical genetic structure) was then detected in free-living wild birdsAuthorsHon S. Ip, Robert J. Dusek, Barbara L. Bodenstein, Mia Kim Torchetti, Paul DeBruyn, Kristin G. Mansfield, Thomas J. DeLiberto, Jonathan M. SleemanSurveillance for highly pathogenic avian influenza virus in wild birds during outbreaks in domestic poultry, Minnesota, 2015
In 2015, a major outbreak of highly pathogenic avian influenza virus (HPAIV) infection devastated poultry facilities in Minnesota, USA. To clarify the role of wild birds, we tested 3,139 waterfowl fecal samples and 104 sick and dead birds during March 9–June 4, 2015. HPAIV was isolated from a Cooper’s hawk but not from waterfowl.AuthorsChristopher S. Jennelle, Michelle Carstensen, Erik C. Hildebrand, Louis Cornicelli, Paul C. Wolf, Daniel A. Grear, Hon S. Ip, Kaci K. VanDalen, Larissa A. Minicucci - News
*Disclaimer: Listing outside positions with professional scientific organizations on this Staff Profile are for informational purposes only and do not constitute an endorsement of those professional scientific organizations or their activities by the USGS, Department of the Interior, or U.S. Government