Mark P Waldrop, Ph.D.
Mark's research expertise is in soil microbial ecology and biogeochemistry in response to global change phenomenon. He leads a team focused on studies of microbial, chemical, and biophysical controls on carbon cycling in permafrost, boreal, and wetland ecosystems of Alaska as well as forest and grassland ecosystems of the Western U.S.
Synergistic Activities
USGS Menlo Park Science Advisory Council Member
US Permafrost Association President
Affiliate/Graduate Faculty, University of Alaska Fairbanks & University of Guelph
Bonanza Creek LTER and Alaska Peatland Experiment (APEX), Principal Investigator
International Soil Carbon Network (NSCN) member
Integrated Ecosystem Model data contributor, AK Climate Science Center
Permafrost Research Coordination Network contributor
Environmental Microbiome Project (EMP) member
North American Carbon Program (NACP), affiliated project lead
Professional Experience
2013- current Project Chief, Mechanisms of Soil Carbon Sequestration
2007- current Research Soil Scientist, USGS, Menlo Park, CA.
2005-2007 Mendenhall Research Fellow, USGS, Menlo Park, CA.
2002-2004 Postdoctoral Fellow, The University of Michigan
Education and Certifications
2002-University of California at Berkeley, Ph.D., Soil Science
1997-University of California at Berkeley, M.S., Soil Science
1995-New Mexico State Univ, B.S. Biology/Ecology, and B.S. Soil Science
Science and Products
Below are Mark's related science projects
Below are Mark's related publication
Filter Total Items: 54
Getting to the root of plant‐mediated methane emissions and oxidation in a thermokarst bog
Vascular plants are important in the wetland methane cycle, but their effect on production, oxidation, and transport has high uncertainty, limiting our ability to predict emissions. In a permafrost‐thaw bog in Interior Alaska, we used plant manipulation treatments, field‐deployed planar optical oxygen sensors, direct measurements of methane oxidation, and microbial DNA analyses to disentangle mech
Authors
Jesse C Turner, Colby J Moorberg, Andrea Wong, Kathleen Shea, Mark Waldrop, Merritt R. Turetsky, Rebecca B. Neumann
Generalized models to estimate carbon and nitrogen stocks of organic soil horizons in Interior Alaska
Boreal ecosystems comprise one tenth of the world’s land surface and contain over 20 % of the global soil carbon (C) stocks. Boreal soils are unique in that its mineral soil is covered by what can be quite thick layers of organic soil. These organic soil layers, or horizons, can differ in their state of decomposition, source vegetation, and disturbance history. These differences result in varying
Authors
Kristen L. Manies, Mark Waldrop, Jennifer W. Harden
Life at the frozen limit: Microbial carbon metabolism across a Late Pleistocene permafrost chronosequence
Permafrost is an extreme habitat yet it hosts microbial populations that remain active over millennia. Using permafrost collected from a Pleistocene chronosequence (19 to 33 ka), we hypothesized that the functional genetic potential of microbial communities in permafrost would reflect microbial strategies to metabolize permafrost soluble organic matter (OM) in situ over geologic time. We also hypo
Authors
Mary-Cathrine Leewis, Renaud Berlemont, David C. Podgorski, Archana Srinivas, Phoebe Zito, Robert G. M. Spencer, Jack McFarland, Thomas A. Douglas, Christopher H. Conaway, Mark Waldrop, Rachel Mackelprang
Soil microbial communities and global change
Soils and soil microbial communities mediate the biogeochemical processes that underly ecosystem-level changes. This chapter examines why soils and soil microbial communities are important for understanding impacts and feedbacks to global change. It discusses the technological approaches and challenges that are at the frontiers of this research area. Global change impacts on microbial communities
Authors
Mark P. Waldrop, Courtney Creamer
Large loss of CO2 in winter observed across pan-arctic permafrost region
Recent warming in the Arctic, which has been amplified during the winter1,2,3, greatly enhances microbial decomposition of soil organic matter and subsequent release of carbon dioxide (CO2)4. However, the amount of CO2 released in winter is not known and has not been well represented by ecosystem models or empirically based estimates5,6. Here we synthesize regional in situ observations of CO2 flux
Authors
Susan M Natali, Jennifer D. Watts, Stefano Potter, Brendan M. Rogers, Sarah M. Ludwig, Anne-Katrin Selbmann, Patrick F. Sullivan, Benjamin W. Abbott, Kyle A. Arndt, Leah Birch, Mats P. Bjorkman, Anthony Bloom, Gerardo Celis, Torben R. Christiensen, Casper T. Christiansen, Roisin Commane, Elisabeth J. Cooper, Patrick Crill, Claudia Czimczik, Sergey Davydov, Jinyang Du, Jocelyn E. Egan, Bo Elberling, Eugenie S. Euskirchen, Thomas Friborg, Helene Genet, Mathias Gockede, Jordan P. Goodrich, Paul Grogan, Manuel Helbig, Elchin E. Jafarov, Julie Jastrow, Aram A.M. Kalhori, Yongwon Kim, John S Kimball, Lars Kutzbach, Mark J. Lara, Klaus S. Larsen, Michael M Loranty, Magnus Lund, Massimo Lupascu, Nima Madani, Avni Malhorta, Jack McFarland, David A. McGuire, Anders Michelson, Christina Minions, Walter C. Oechel, David Olefeldt, Frans-Jan Parmentier, Norbert Pirk, Benjamin Poulter, William L. Quinton, Fereidoun Rezanezhad, David Risk, Torsten Sachs, Kevin Schaefer, Neils M. Schmidt, Edward A. Schuur, Philipp R. Semenchuk, Gaius Shaver, Oliver Sonnentag, Gregory Starr, Claire C. Treat, Mark P. Waldrop, Yihui Wang, Jeffrey Welker, Christian Wille, Xiaofeng Xu, Zhen Zhang, Qianlai Zhuang, Donatella Zona
Mineralogy dictates the initial mechanism of microbial necromass association
Soil organic matter (SOM) improves soil fertility and mitigates disturbance related to climate and land use change. Microbial necromass (the accumulated cellular residues of microorganisms) comprises the majority of soil C, yet the formation and persistence of necromass in relation to mineralogy is poorly understood. We tested whether soil minerals had different microbial necromass association mec
Authors
Courtney Creamer, Andrea L. Foster, Corey Lawrence, Jack McFarland, Marjorie S. Schulz, Mark Waldrop
Towards determining spatial methane distribution on Arctic permafrost bluffs with an unmanned aerial system
Arctic permafrost stores vast amounts of methane (CH4) in subsurface reservoirs. Thawing permafrost creates areas for this potent greenhouse gas to be released to the atmosphere. Identifying ‘hot spots’ of methane flux on a local scale has been limited by the spatial scales of traditional ground-based or satellite-based methane-sampling methods. Here we present a reliable and an easily replicable
Authors
Ferdinand K. J. Oberle, Ann E. Gibbs, Bruce M. Richmond, Li H. Erikson, Mark P. Waldrop, Peter W. Swarzenski
Changes in the active, dead, and dormant microbial community structure across a Pleistocene permafrost chronosequence
Permafrost hosts a community of microorganisms that survive and reproduce for millennia despite extreme environmental conditions such as water stress, subzero temperatures, high salinity, and low nutrient availability. Many studies focused on permafrost microbial community composition use DNA-based methods such as metagenomic and 16S rRNA gene sequencing. However, these methods do not distinguish
Authors
Alexander Burkert, Thomas A. Douglas, Mark Waldrop, Rachel Mackelprang
Effect of permafrost thaw on plant and soil fungal community in the boreal forest: Does fungal community change mediate plant productivity response?
Permafrost thaw is leading to rapid shifts in boreal ecosystem function. Permafrost thaw affects soil carbon turnover through changes in soil hydrology, however, the biotic mechanisms regulating plant community response remain elusive. Here, we measured the response of fungal community composition and soil nutrient content in an intact permafrost plateau forest soil and an adjacent thermokarst bog
Authors
Ursel M.E Schütte, Jeremiah A. Henning, Yuzhen Ye, A. Bowling, James D. Ford, Helene Genet, Mark Waldrop, Merritt R. Turetsky, Jeffrey R. White, James D Bever
Biological and mineralogical controls over cycling of low molecular weight organic compounds along a soil chronosequence
Low molecular weight organic compounds (LMWOC) represent a small but critical component of soil organic matter (SOM) for microbial growth and metabolism. The fate of these compounds is largely under microbial control, yet outside the cell, intrinsic soil properties can also significantly influence their turnover and retention. Using a chronosequence representing 1200 ka of pedogenic development, w
Authors
Jack McFarland, Mark P. Waldrop, Daniel Strawn, Courtney Creamer, Corey R. Lawrence, Monica Haw
Warming effects of spring rainfall increase methane emissions from thawing permafrost
Methane emissions regulate the near‐term global warming potential of permafrost thaw, particularly where loss of ice‐rich permafrost converts forest and tundra into wetlands. Northern latitudes are expected to get warmer and wetter, and while there is consensus that warming will increase thaw and methane emissions, effects of increased precipitation are uncertain. At a thawing wetland complex in I
Authors
Rebecca B. Neumann, C.J. Moorberg, J.D. Lundquist, J.C. Turner, Mark P. Waldrop, Jack W. McFarland, E.S. Euskirchen, C.W. Edgar, M. R. Turetsky
Understanding how microbiomes influence the systems they inhabit
Translating the ever-increasing wealth of information on microbiomes (environment, host, or built environment) to advance the understanding of system-level processes is proving to be an exceptional research challenge. One reason for this challenge is that relationships between characteristics of microbiomes and the system-level processes they influence are often evaluated in the absence of a robus
Authors
E.K. Hall, E. S. Bernhardt, R.L. Bier, M.A. Bradford, C.M. Boot, J.B. Cotner, P.A. del Giorgio, S.E. Evans, E.B.; Graham, S.E. Jones, J.T. Lennon, Kenneth J. Locey, D. Nemergut, B. Osborne, J.D. Rocca, J.S. Schimel, Mark Waldrop, M.W. Wallenstein
Science and Products
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Filter Total Items: 54Getting to the root of plant‐mediated methane emissions and oxidation in a thermokarst bog
Vascular plants are important in the wetland methane cycle, but their effect on production, oxidation, and transport has high uncertainty, limiting our ability to predict emissions. In a permafrost‐thaw bog in Interior Alaska, we used plant manipulation treatments, field‐deployed planar optical oxygen sensors, direct measurements of methane oxidation, and microbial DNA analyses to disentangle mechAuthorsJesse C Turner, Colby J Moorberg, Andrea Wong, Kathleen Shea, Mark Waldrop, Merritt R. Turetsky, Rebecca B. NeumannGeneralized models to estimate carbon and nitrogen stocks of organic soil horizons in Interior Alaska
Boreal ecosystems comprise one tenth of the world’s land surface and contain over 20 % of the global soil carbon (C) stocks. Boreal soils are unique in that its mineral soil is covered by what can be quite thick layers of organic soil. These organic soil layers, or horizons, can differ in their state of decomposition, source vegetation, and disturbance history. These differences result in varyingAuthorsKristen L. Manies, Mark Waldrop, Jennifer W. HardenLife at the frozen limit: Microbial carbon metabolism across a Late Pleistocene permafrost chronosequence
Permafrost is an extreme habitat yet it hosts microbial populations that remain active over millennia. Using permafrost collected from a Pleistocene chronosequence (19 to 33 ka), we hypothesized that the functional genetic potential of microbial communities in permafrost would reflect microbial strategies to metabolize permafrost soluble organic matter (OM) in situ over geologic time. We also hypoAuthorsMary-Cathrine Leewis, Renaud Berlemont, David C. Podgorski, Archana Srinivas, Phoebe Zito, Robert G. M. Spencer, Jack McFarland, Thomas A. Douglas, Christopher H. Conaway, Mark Waldrop, Rachel MackelprangSoil microbial communities and global change
Soils and soil microbial communities mediate the biogeochemical processes that underly ecosystem-level changes. This chapter examines why soils and soil microbial communities are important for understanding impacts and feedbacks to global change. It discusses the technological approaches and challenges that are at the frontiers of this research area. Global change impacts on microbial communitiesAuthorsMark P. Waldrop, Courtney CreamerLarge loss of CO2 in winter observed across pan-arctic permafrost region
Recent warming in the Arctic, which has been amplified during the winter1,2,3, greatly enhances microbial decomposition of soil organic matter and subsequent release of carbon dioxide (CO2)4. However, the amount of CO2 released in winter is not known and has not been well represented by ecosystem models or empirically based estimates5,6. Here we synthesize regional in situ observations of CO2 fluxAuthorsSusan M Natali, Jennifer D. Watts, Stefano Potter, Brendan M. Rogers, Sarah M. Ludwig, Anne-Katrin Selbmann, Patrick F. Sullivan, Benjamin W. Abbott, Kyle A. Arndt, Leah Birch, Mats P. Bjorkman, Anthony Bloom, Gerardo Celis, Torben R. Christiensen, Casper T. Christiansen, Roisin Commane, Elisabeth J. Cooper, Patrick Crill, Claudia Czimczik, Sergey Davydov, Jinyang Du, Jocelyn E. Egan, Bo Elberling, Eugenie S. Euskirchen, Thomas Friborg, Helene Genet, Mathias Gockede, Jordan P. Goodrich, Paul Grogan, Manuel Helbig, Elchin E. Jafarov, Julie Jastrow, Aram A.M. Kalhori, Yongwon Kim, John S Kimball, Lars Kutzbach, Mark J. Lara, Klaus S. Larsen, Michael M Loranty, Magnus Lund, Massimo Lupascu, Nima Madani, Avni Malhorta, Jack McFarland, David A. McGuire, Anders Michelson, Christina Minions, Walter C. Oechel, David Olefeldt, Frans-Jan Parmentier, Norbert Pirk, Benjamin Poulter, William L. Quinton, Fereidoun Rezanezhad, David Risk, Torsten Sachs, Kevin Schaefer, Neils M. Schmidt, Edward A. Schuur, Philipp R. Semenchuk, Gaius Shaver, Oliver Sonnentag, Gregory Starr, Claire C. Treat, Mark P. Waldrop, Yihui Wang, Jeffrey Welker, Christian Wille, Xiaofeng Xu, Zhen Zhang, Qianlai Zhuang, Donatella ZonaMineralogy dictates the initial mechanism of microbial necromass association
Soil organic matter (SOM) improves soil fertility and mitigates disturbance related to climate and land use change. Microbial necromass (the accumulated cellular residues of microorganisms) comprises the majority of soil C, yet the formation and persistence of necromass in relation to mineralogy is poorly understood. We tested whether soil minerals had different microbial necromass association mecAuthorsCourtney Creamer, Andrea L. Foster, Corey Lawrence, Jack McFarland, Marjorie S. Schulz, Mark WaldropTowards determining spatial methane distribution on Arctic permafrost bluffs with an unmanned aerial system
Arctic permafrost stores vast amounts of methane (CH4) in subsurface reservoirs. Thawing permafrost creates areas for this potent greenhouse gas to be released to the atmosphere. Identifying ‘hot spots’ of methane flux on a local scale has been limited by the spatial scales of traditional ground-based or satellite-based methane-sampling methods. Here we present a reliable and an easily replicableAuthorsFerdinand K. J. Oberle, Ann E. Gibbs, Bruce M. Richmond, Li H. Erikson, Mark P. Waldrop, Peter W. SwarzenskiChanges in the active, dead, and dormant microbial community structure across a Pleistocene permafrost chronosequence
Permafrost hosts a community of microorganisms that survive and reproduce for millennia despite extreme environmental conditions such as water stress, subzero temperatures, high salinity, and low nutrient availability. Many studies focused on permafrost microbial community composition use DNA-based methods such as metagenomic and 16S rRNA gene sequencing. However, these methods do not distinguishAuthorsAlexander Burkert, Thomas A. Douglas, Mark Waldrop, Rachel MackelprangEffect of permafrost thaw on plant and soil fungal community in the boreal forest: Does fungal community change mediate plant productivity response?
Permafrost thaw is leading to rapid shifts in boreal ecosystem function. Permafrost thaw affects soil carbon turnover through changes in soil hydrology, however, the biotic mechanisms regulating plant community response remain elusive. Here, we measured the response of fungal community composition and soil nutrient content in an intact permafrost plateau forest soil and an adjacent thermokarst bogAuthorsUrsel M.E Schütte, Jeremiah A. Henning, Yuzhen Ye, A. Bowling, James D. Ford, Helene Genet, Mark Waldrop, Merritt R. Turetsky, Jeffrey R. White, James D BeverBiological and mineralogical controls over cycling of low molecular weight organic compounds along a soil chronosequence
Low molecular weight organic compounds (LMWOC) represent a small but critical component of soil organic matter (SOM) for microbial growth and metabolism. The fate of these compounds is largely under microbial control, yet outside the cell, intrinsic soil properties can also significantly influence their turnover and retention. Using a chronosequence representing 1200 ka of pedogenic development, wAuthorsJack McFarland, Mark P. Waldrop, Daniel Strawn, Courtney Creamer, Corey R. Lawrence, Monica HawWarming effects of spring rainfall increase methane emissions from thawing permafrost
Methane emissions regulate the near‐term global warming potential of permafrost thaw, particularly where loss of ice‐rich permafrost converts forest and tundra into wetlands. Northern latitudes are expected to get warmer and wetter, and while there is consensus that warming will increase thaw and methane emissions, effects of increased precipitation are uncertain. At a thawing wetland complex in IAuthorsRebecca B. Neumann, C.J. Moorberg, J.D. Lundquist, J.C. Turner, Mark P. Waldrop, Jack W. McFarland, E.S. Euskirchen, C.W. Edgar, M. R. TuretskyUnderstanding how microbiomes influence the systems they inhabit
Translating the ever-increasing wealth of information on microbiomes (environment, host, or built environment) to advance the understanding of system-level processes is proving to be an exceptional research challenge. One reason for this challenge is that relationships between characteristics of microbiomes and the system-level processes they influence are often evaluated in the absence of a robusAuthorsE.K. Hall, E. S. Bernhardt, R.L. Bier, M.A. Bradford, C.M. Boot, J.B. Cotner, P.A. del Giorgio, S.E. Evans, E.B.; Graham, S.E. Jones, J.T. Lennon, Kenneth J. Locey, D. Nemergut, B. Osborne, J.D. Rocca, J.S. Schimel, Mark Waldrop, M.W. Wallenstein