Software

Code files "growth_analysis.R" -An R script to fit the von Bertalanffy growth model to growth data from San Francisco gartersnakes. The von Bertalanffy growth model is fit using JAGS software (Plummer 2003), and is based on the model presented in Armstrong and Brooks (2013). "survival_analysis.R" -An R script to fit the robust-design Cormack-Jolly-Seber model to capture-mark-recapture...

poscrptR is a simple R package with the sole purpose of distributing a shiny app for predicting post-fire conifer regeneration. Learn more about shiny apps here.

The Groundwater/Surface-Water Method Selection Tool (GW/SW-MST) is a spreadsheet-based tool to help practitioners identify methods for use in groundwater/surface-water (GW/SW) exchange and hyporheic studies. GW/SW exchange and hyporheic processes are topics receiving increasing attention from the hydrologic community. Hydraulic, chemical, temperature, geophysical, and remote sensing...

MODFLOW-NWT is a Newton-Raphson formulation for MODFLOW-2005 to improve solution of unconfined groundwater-flow problems. MODFLOW-NWT is a standalone program that is intended for solving problems involving drying and rewetting nonlinearities of the unconfined groundwater-flow equation.

This software code was developed to estimate the probability that individuals found at a geographic location will belong to the same genetic cluster as individuals at the nearest empirical sampling location for which ancestry is known. POPMAPS includes 5 main functions to calculate and visualize these results (see Table 1 for functions and arguments). Population assignment coefficients...

SolVES is a tool for modeling and mapping social survey response data in relation to explanatory environmental variables. SolVES 4.0 was developed as open-source software with Python and uses the free software packages QGIS for its user interface and PostgreSQL spatially enabled by PostGIS for its source database. Updates to the previous version include minor changes to the source...