Arctic Cod (Boreogadus saida) serve as an important link in Arctic food webs and are thus considered an important species for environmental monitoring. RNA-Seq was conducted on samples from wild-collected individuals representing various age classes and tissue types to obtain as complete a transcriptome as possible on an Illumina MiSeq, which resulted in a total of 64,457 transcripts with an average length of 295 bp. We identified well-known genes that are associated with temperature change or response to pollutants. This RNA-Seq effort provides the first insight into the B. saida transcriptome, which can be a starting point for investigations identifying genes for local adaptation and genomic responses to future environmental change.
Citation Information
Publication Year | 2018 |
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Title | A transcriptome resource for the Arctic Cod (Boreogadus saida) |
DOI | 10.1016/j.margen.2018.03.003 |
Authors | Robert E. Wilson, Damian M. Menning, Kate Wedemeyer, Sandra L. Talbot |
Publication Type | Article |
Publication Subtype | Journal Article |
Series Title | Marine Genomics |
Index ID | 70198678 |
Record Source | USGS Publications Warehouse |
USGS Organization | Alaska Science Center Biology WTEB |