Estuarine processes can be effective in modifying (filtering) distributions of dissolved inorganic forms of carbon (DIC), silicon (DIS), nitrogen (DIN), and phosphorus (DIP) in northern San Francisco Bay. During winter, high inflow from the Sacramento-San Joaquin river system supplied these nutrients to the estuary at rates that exceeded potential rates of estuarine supply and removal processes. During spring and summer, when inflow rates were lower, the estuary was an effective “filter” of the river inflow “signal” because rates of estuarine processes were high relative to river and other supply rates. At lower inflow rates, the river apparently influenced estuarine hydrodynamic features that controlled rates of phytoplankton nutrient removal. Largest biological removal effects were localized in San Pablo Bay during spring and Suisun Bay during summer, and they were generally more pronounced in shallow water areas of the bays. In San Pablo Bay, effects of biological removal appeared soon after river inflow decreased from high winter rates, but persisted for only a short time. During the following summer months, DIN and DIP distributions in San Pablo Bay indicated that estuarine sources contributed to higher concentrations of these nutrients.
