Campylorhynchus brunneicapillus Single Nucleotide Polymorphism Genotype Data from Southern California, USA
June 23, 2025
This dataset contains 184 single nucleotide polymorphism (SNP) genotypes of Campylorhynchus brunneicapillus (Cactus Wren) sampled in southern California. Genomic markers were generated from ddRAD loci and analyzed using the Stacks v2.60 pipeline. The genotypes for all samples are provided in a VCF file with 40,707 independent loci. A companion sample data file is provided with sample names, location, and other data. These files may be opened and edited in a text editor program, such as Notepad (PC) or BBEdit (Mac). The .vcf file can be loaded into the Stacks population program to calculate genetic diversity statistics, or loaded into R, using vcfR, for further analysis.
Citation Information
| Publication Year | 2025 |
|---|---|
| Title | Campylorhynchus brunneicapillus Single Nucleotide Polymorphism Genotype Data from Southern California, USA |
| DOI | 10.5066/P18WGRYU |
| Authors | Amy Vandergast, Dustin A Wood, Julia G Smith, Anna Mitelberg |
| Product Type | Data Release |
| Record Source | USGS Asset Identifier Service (AIS) |
| USGS Organization | Western Ecological Research Center - Headquarters |
| Rights | This work is marked with CC0 1.0 Universal |