Software
An official USGS software project is code reviewed and approved at the bureau-level for distribution.
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Barry Arm landslide complex tsunami modeling scenarios, version 1.0.0 Barry Arm landslide complex tsunami modeling scenarios, version 1.0.0
This repository contains the code needed to reproduce computations presented in Barnhart and others (under review). This readme contains instructions for reproducing results and a list of the git hashes for each source repository used. Computation for this manuscript was done on the U.S. Geological Survey Denali High Performance Computer (Falgout and others, 2024). Barnhart, K.R., George...
Nonstationary demographic state-space models: R and JAGS code Nonstationary demographic state-space models: R and JAGS code
This repository contains R and JAGS code for fitting nonstationary demographic state-space models (NDSSM) to count-valued abundance data. Models use reduced dynamics but explicitly characterize growth rate distributions, including changepoints and/or volatility clustering for the timing and impacts of environmental stressors. Species fecundity is used to truncate growth rate...
cgsim: An R package for simulating conservation relevant outcomes for management actions, (version 1.0.2) cgsim: An R package for simulating conservation relevant outcomes for management actions, (version 1.0.2)
Wildlife conservation and management increasingly considers genetic information to plan, understand, and evaluate implemented population interventions. These actions commonly include conservation translocation and population reductions through removals. Change in genetic variation in response to management actions can be unintuitive due to the influence of multiple interacting drivers of...
The Precipitation Runoff Modeling System (PRMS) version 5.2.1.1 The Precipitation Runoff Modeling System (PRMS) version 5.2.1.1
The need to assess the effects of variability in climate, biota, geology, and human activities on water availability and flow can be assessed with computer models that simulate the hydrologic cycle at a watershed scale. The Precipitation-Runoff Modeling System (PRMS) is a deterministic, distributed-parameter, physical process-based modeling system developed to evaluate the response of...
Code for Connectivity patterns between floodplain lakes and neighboring streams in the historical floodplain of the Lower Mississippi River Code for Connectivity patterns between floodplain lakes and neighboring streams in the historical floodplain of the Lower Mississippi River
The program computes eight metrics reflective of lake and stream connectivity including duration, timing, recurrence, continuance, disconnectedness, dry season, wet season, and seasonality.
Code for Idiosyncratic spatial scaling of biodiversity–disease relationships Code for Idiosyncratic spatial scaling of biodiversity–disease relationships
This repository contains data and code supporting the Gilbert et. al manuscript entitled, "Idiosyncratic spatial scaling of biodiversity–disease relationships". The objective of the paper is to evaluate how estimated relationships between Lyme disease risk and host biodiversity change when host biodiversity is quantified at different spatial scales. Data come from the National Ecological