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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. 

 

**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 5125

Parallel signatures of selection at genomic islands of divergence and the major histocompatibility complex in ecotypes of sockeye salmon across Alaska Parallel signatures of selection at genomic islands of divergence and the major histocompatibility complex in ecotypes of sockeye salmon across Alaska

Understanding the genetic mechanisms that facilitate adaptive radiation is an important component of evolutionary biology. Here, we genotyped 82 neutral SNPs, seven SNPs in islands of divergence identified in a previous study (island SNPs), and a region of the major histocompatibility complex (MHC) in 32 populations of sockeye salmon to investigate whether conserved genes and genomic...
Authors
Wesley Larson, Tyler H. Dann, Morten T. Limborg, Garrett J. McKinney, James E. Seeb, Lisa W. Seeb

Survival outcome patterns revealed by deploying advanced tags in quantity: Pacific halibut (Hippoglossus stenolepis) survivals after release from trawl catches through expedited sorting Survival outcome patterns revealed by deploying advanced tags in quantity: Pacific halibut (Hippoglossus stenolepis) survivals after release from trawl catches through expedited sorting

Bycatch of Pacific halibut (Hippoglossus stenolepis) limits many trawl fisheries in Alaska and greatly concerns stakeholders from local communities and fisheries that rely on Pacific halibut. To reduce Pacific halibut mortality, trawlers in the Bering Sea that target flatfish have been developing expedited release procedures to sort Pacific halibut from catches earlier than current...
Authors
Craig S. Rose, Julie K. Nielsen, John Gauvin, Tim Loher, Suresh Sethi, Andrew C. Seitz, Michael B. Courtney, Paige Drobny

Plasticity in elk migration timing is a response to changing environmental conditions Plasticity in elk migration timing is a response to changing environmental conditions

Migration is an effective behavioral strategy for prolonging access to seasonal resources and may be a resilient strategy for ungulates experiencing changing climatic conditions. In the Greater Yellowstone Ecosystem (GYE), elk are the primary ungulate, with approximately 20,000 individuals migrating to exploit seasonal gradients in forage while also avoiding energetically costly snow...
Authors
Gregory J.M. Rickbeil, Jerod A. Merkle, Greg Anderson, M. Paul Atwood, Jon P. Beckmann, Eric K Cole, Alyson B. Courtemanch, Sarah Dewey, David D. Gustine, Matthew J. Kauffman, Douglas E. McWhirter, Tony W. Mong, Kelly Proffitt, Patrick J. White, Arthur D. Middleton

Validating the performance of occupancy models for estimating habitat use and predicting the distribution of highly-mobile species: A case study using the American black bear Validating the performance of occupancy models for estimating habitat use and predicting the distribution of highly-mobile species: A case study using the American black bear

Occupancy models have become a valuable tool for estimating wildlife-habitat relationships and for predicting species distributions. Highly-mobile species often violate the assumption that sampling units are geographically closed shifting the probability of occupancy to be interpreted as the probability of use. We used occupancy models, in conjunction with noninvasive sampling, to...
Authors
Matthew J. Gould, William R. Gould, James W. Cain, Gary W. Roemer

Relatedness within and among Myotis septentrionalis colonies at a local scale Relatedness within and among Myotis septentrionalis colonies at a local scale

Abstract: We assessed parentage within and among maternity colonies of the northern long-eared bat (Myotis septentrionalis Troessart 1897) in north-central Kentucky from 2011–2013 to better understand colony social structure, formation, and membership dynamics. We intensively sampled colonies in close and remote (> 10 km) spatial proximity both before and after targeted day-roost removal...
Authors
W. Mark Ford, Miluska Olivera-Hyde, Alexander Silvis, Eric M. Hallerman, Eric R. Britzke

Environmental regulation of sex determination in fishes: Insights from Atheriniformes Environmental regulation of sex determination in fishes: Insights from Atheriniformes

Sex determination is the first step toward the establishment of phenotypic sex in most vertebrates. Aquatic poikilotherms such as teleost fishes exhibit a high diversity of sex-determination mechanisms and gonadal phenotypes that are remarkably plastic and responsive to a variety of environmental factors (e.g., water temperature, pH, salinity, photoperiod, population density). This...
Authors
Y. Yamamoto, R. S. Hattori, Reynaldo Patino, C. A. Strüssmann

Growth disparity in sympatric kokanee breeding groups Growth disparity in sympatric kokanee breeding groups

Growth is arguably the most important dynamic rate function due to its interaction with survival and recruitment. As such, understanding the mechanisms underlying growth is a primary focus of fisheries research. Kokanee Oncorhynchus nerka in Lake Pend Oreille, Idaho, provide an interesting case study for investigating the factors that influence growth. Early‐run and late‐run kokanee...
Authors
Zachary B. Klein, Michael C. Quist, Andrew M. Dux, Matthew P. Corsi

Spatial heterogeneity of prion gene polymorphisms in an area recently infected by chronic wasting disease Spatial heterogeneity of prion gene polymorphisms in an area recently infected by chronic wasting disease

Genetic variability in the prion protein (Prnp) gene influences host susceptibility to many pathogenic prion diseases. Understanding the distribution of susceptible Prnp variants and determining factors influencing spatial genetic patterns are important components of many chronic wasting disease mitigation strategies. Here, we describe Prnp variability in white-tailed deer (Odocoileus...
Authors
William L. Miller, W. David Walter

Field-level characteristics influence wild bee functional guilds on public lands managed for conservation Field-level characteristics influence wild bee functional guilds on public lands managed for conservation

Throughout the Midwestern US, many public lands set aside for conservation engage in management activities (e.g., agriculture) that may act as stressors on wild bee populations. Several studies have investigated how wild bees respond to large-scale agriculture production; however, there has been limited assessment of how wild bees may be impacted by agricultural activity on public lands...
Authors
A.R. Main, Elisabeth B. Webb, K. W. Goyne, D. Mengel

Black-tailed prairie dog, Cynomys ludovicianus (Sciuridae), metapopulation response to novel sourced conspecific signals Black-tailed prairie dog, Cynomys ludovicianus (Sciuridae), metapopulation response to novel sourced conspecific signals

Aggregation of territorial individuals within a species can be facilitated via conspecific signals, wherein settlement implies habitat suitability, ease of resource acquisition and/or increased predator detection. The black-tailed prairie dog is a colonial small mammal with alarm vocalizations that confer benefits via group vigilance against predators and increased foraging time...
Authors
Anna D. Chalfoun, Lauren C. Connell, Lauren M. Porensky, John D. Scasta

Angler catch and harvest of targeted sportfishes in small Georgia lakes Angler catch and harvest of targeted sportfishes in small Georgia lakes

Public fishing areas (PFAs) in Georgia are intensively managed freshwater impoundments that provide a variety of fishing opportunities to anglers. Management efforts and fishing regulations at these PFAs depend on understanding basic aspects of recreational fishing pressure, catch, and harvest. Accordingly, we conducted a roving creel survey during January – December 2013 at Marben PFA...
Authors
H. J. Roop, N. C. Poudyal, Cecil A. Jennings

Antipredator response diminishes during periods of resource deficit for a large herbivore Antipredator response diminishes during periods of resource deficit for a large herbivore

The starvation-predation hypothesis predicts that, during resource shortages, prey forego antipredator behavior and forage as much as possible to avoid starvation, even when risk of predation is high. We tested this hypothesis using GPS locations collected simultaneously from moose (Alces alces) and wolves (Canis lupus) in the Greater Yellowstone Ecosystem of North America. We assessed...
Authors
Brendan A. Oates, J.A. Merkle, Matthew J. Kauffman, S.R. Dewey, M.D. Jimenez, J.M. Vartanian, S.A. Becker, J.R. Goheen
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