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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 4762

Leveraging detection uncertainty to estimate Renibacterium salmoninarum infection status among multiple tissues and assays

Effective disease surveillance relies on accurate pathogen testing and robust prevalence estimates. Diagnostic specificity (DSp), the probability that an uninfected animal tests negative, is high when false positives are low. Diagnostic sensitivity (DSe) is the probability an infected animal tests positive; higher DSe means fewer false negatives. However, sensitivity and false negatives...
Authors
Tawni B.R. Firestone, Eric R. Fetherman, Kathryn P. Huyvaert, John D. Drennan, Rebecca E. Brock, Brooke Yeatts, Dana L. Winkelman

Long-term patterns in growth of White Sturgeon in the Sacramento-San Joaquin River basin, California.

Introduction: The Sacramento-San Joaquin River system (SSJ) of California includes both riverine, delta, and estuarine habitats and is among the most modified aquatic ecosystems in the United States. Water development projects in the system are associated with declines of many native species, including White Sturgeon Acipenser transmontanus.Methods: We used White Sturgeon pectoral fin...
Authors
Michael Quist, Shannon Blackburn, Marta Ulaski, Zachary Jackson

Modeling lamprey distribution using flow, geomorphology, and elevation in a terminal lake system

ObjectiveLampreys are an ecologically important group of fishes. Several species are imperiled and lack key distribution and habitat data. The terminal Goose Lake Basin, U.S.A. is home to two such species, the Goose Lake Lamprey, Entosphenus sp. (formally undescribed), and the Pit-Klamath Brook Lamprey, E. lethophagus. Species distribution models (SDMs) are useful for identifying key...
Authors
Jacob C. Dickey, Benjamin J. Clemens, Michael Dumelle, Melanie J. Davis

How sampling design of GPS collar deployment influences consistency of mapped migration corridors over time

Federal and state agencies within the United States have recently issued directives prioritizing the conservation of ungulate migration corridors and winter ranges. The ability to identify and delineate the spatial distribution of seasonal ranges underpins these policies. While such delineations are often derived from global positioning system (GPS) collar data collected for a few years...
Authors
Emily R. Gelzer, Justine A. Becker, Samantha P.H. Dwinnell, Gary L. Fralick, L. Embere Hall, Rusty C. Kaiser, Matthew Kauffman, Tayler N. LaSharr, Kevin L. Monteith, Anna C. Ortega, Jill E. Randall, Hall Sawyer, Mark A. Thonhoff, Jerod A. Merkle

On the interface between cultural transmission, phenotypic diversity, demography and the conservation of migratory ungulates

Recent evidence indicates that green-wave surfing behaviour in ungulates and the migrations that stem from this behaviour are socially learned, culturally transmitted across generations and become more efficient via cumulative cultural evolution. But given a lack of corroborative evidence, whether ungulate migration is a cultural phenomenon remains a hypothesis deserving of further...
Authors
Brett R. Jesmer, Janey Fugate, Matthew Kauffman

Linking age and social status of cooperative breeders to vulnerability throughout the harvest season

Individual behaviors are influenced by environmental, genetic, and demographic factors. Some animals choose to live in groups and cooperatively breed, and their behaviors can change depending on dynamic factors such as group size and composition that affect group persistence. In Idaho, USA, gray wolves (Canis lupus) are harvested annually, providing an opportunity to investigate the...
Authors
Peter F. Rebholz, Sarah B. Bassing, Lisette P. Waits, David Edward Ausband

Comparison of lapilli otoliths and pectoral fin rays for estimating age of Northern Pikeminnows

The Northern Pikeminnow Ptychocheilus oregonensis is a piscivorous cyprinid native to western North America. Information on the best structure for estimating the age of Northern Pikeminnows is a key knowledge gap that may limit inquiries on management efforts. Thus, the objective of this study was to evaluate between-reader precision and concordance between age estimates for lapilli...
Authors
Caleb M. Wilson, Bryce Marciniak, Mike Thomas, Jordan Messner, Matthew P. Corsi, Michael Quist

Mahi-mahi metacouplings: Quantifying human–nature interactions in dolphinfish (Coryphaena hippurus) fisheries

Fisheries encompass humans and fish, but fisheries researchers rarely model human–nature interactions over space and time. I filled this information gap for dolphinfish (Coryphaena hippurus), a popular, widely distributed species that supports industrial, artisanal, recreational, and subsistence fisheries. Dolphinfish human–nature interactions showed a long-term up-and-down pattern in...
Authors
Andrew Kenneth Carlson

Do mule deer surf peaks in forage quality while on summer range?

Many animals track ephemeral peaks in food abundance and quality that propagate across landscapes. Migrating ungulates, in particular, track waves of newly emerging plants from low-elevation winter ranges to high-elevation summer ranges—known as “green-wave surfing.” Because plants lose crude protein and gain insoluble fiber with maturation, ruminants are expected to exploit peaks in...
Authors
Anna Ortega, Kevin L. Monteith, Benjamin Wise, Matthew Kauffman

Relative abundance, seasonal occurrence, and distribution of marine birds in the northern Gulf of Mexico

Marine birds in the U.S. Gulf of Mexico have long been poorly studied. Given statutory obligations to protect migratory birds and endangered species, three broad-scale vessel and aerial programs initiated since 2010 have now surveyed the entire northern Gulf. Vessel coverage alone exceeds 700 d and 74,000 km of observer effort using 300-m strip transects. We supplemented these survey...
Authors
J. Christopher Haney, Pamela E. Michael, Jeffery S. Gleason, Randy Wilson, Yvan G. Satgé, Kathy M. Hixson, Patrick G.R. Jodice

Looking for Lazarus: Environmental DNA (eDNA) surveillance of the federally threatened Slender Chub (Erimystax cahini) in the Clinch and Powell Rivers

Erimystax cahni (Slender Chub) is a federally threatened fish native to the Powell, Clinch, and lower Holston rivers of Tennessee and Virginia. No individuals have been captured or reported for over 2 decades. We developed a species-specific environmental DNA (eDNA) assay to survey for its presence throughout its native distribution in new and historical sites. We detected Slender Chub...
Authors
R.T. Paine, Mark W. Rogers, Amanda E. Rosenberger

Simulating demography, monitoring, and management decisions to evaluate adaptive management strategies for endangered species

Adaptive management (AM) remains underused in conservation, partly because optimization-based approaches require real-world problems to be substantially simplified. We present an approach to AM based in management strategy evaluation, a method used largely in fisheries. Managers define objectives and nominate alternative adaptive strategies, whose future performance is simulated by...
Authors
Stefano Canessa, Sarah J. Converse, Lynn Adams, Doug P. Armstrong, Troy Makan, Mhairi McCready, Kevin A. Parker, Elizabeth H. Parlato, Hannah A. Sipe, John J. Ewen
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