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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. 

 

**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 5125

Evaluating stocking efficacy in an ecosystem undergoing oligotrophication Evaluating stocking efficacy in an ecosystem undergoing oligotrophication

Oligotrophication has negatively affected fisheries production in many freshwater ecosystems and could conceivably reduce the efficacy of stockings used to enhance fisheries. In Lake Michigan, offshore oligotrophication has occurred since the 1970s, owing to reductions in total phosphorus (TP) inputs and nearshore sequestration of TP by nonindigenous dreissenid mussels. We evaluated...
Authors
Yu-Chun Kao, Mark W. Rogers, David B. Bunnell

Habitat associations of juvenile Burbot in a tributary of the Kootenai River Habitat associations of juvenile Burbot in a tributary of the Kootenai River

Burbot Lota lota in the lower Kootenai River, Idaho, have been the focus of extensive conservation efforts, particularly conservation aquaculture. One of the primary management strategies has been the release of Burbot into small tributaries in the Kootenai River basin, such as Deep Creek. Since 2012, approximately 12,000 juvenile Burbot have been stocked into Deep Creek; however, little...
Authors
Zachary S. Beard, Michael C. Quist, Ryan S. Hardy, Tyler J. Ross

Unique genome organization of non-mammalian papillomaviruses provides insights into the evolution of viral early proteins Unique genome organization of non-mammalian papillomaviruses provides insights into the evolution of viral early proteins

The family Papillomaviridae contains more than 320 papillomavirus types, with most having been identified as infecting skin and mucosal epithelium in mammalian hosts. To date, only nine non-mammalian papillomaviruses have been described from birds (n = 5), a fish (n = 1), a snake (n = 1), and turtles (n = 2). The identification of papillomaviruses in sauropsids and a sparid fish suggests...
Authors
Koenraad Van Doorslaer, Valeria Ruoppolo, Annie Schmidt, Amelie Lescroel, Dennis Jongsomjit, Megan Elrod, Simona Kraberger, Daisy Stainton, Katie M. Dugger, Grant Ballard, David G. Ainley, Arvind Varsani

Evaluation of genetic population structure of smallmouth bass in the Susquehanna River basin, Pennsylvania Evaluation of genetic population structure of smallmouth bass in the Susquehanna River basin, Pennsylvania

The Smallmouth Bass Micropterus dolomieu was introduced into the Susquehanna River basin, Pennsylvania, nearly 150 years ago. Since introduction, it has become an economically and ecologically important species that supports popular recreational fisheries. It is also one of the most abundant top predators in the system. Currently, there is no information on the level of genetic diversity...
Authors
Megan K. Schall, Meredith L. Bartron, Timothy Wertz, Jonathan M. Niles, Cassidy H. Shaw, Tyler Wagner

Evaluating population expansion of black bears using spatial capture-recapture Evaluating population expansion of black bears using spatial capture-recapture

The population of American black bears (Ursus americanus) in southern New York, USA has been growing and expanding in range since the 1990s. This has motivated a need to anticipate future patterns of range expansion. We conducted a non-invasive, genetic, spatial capture-recapture (SCR) study to estimate black bear density and identify spatial patterns of population density that are...
Authors
Catherine C. Sun, Angela K. Fuller, Matthew P. Hare, Jeremy E. Hurst

A new species of freshwater eel-tailed catfish of the genus Tandanus (Teleostei: Plotosidae) from coastal rivers of mid-northern New South Wales, Australia A new species of freshwater eel-tailed catfish of the genus Tandanus (Teleostei: Plotosidae) from coastal rivers of mid-northern New South Wales, Australia

Tandanus bellingerensis, new species, is described based on specimens from four river drainages (Bellinger, Macleay, Hastings, and Manning rivers) of the mid-northern coast of New South Wales, Australia. Previously, three species were recognized in the genus Tandanus: T. tropicanus of the wet tropics region of northeast Queensland, T. tandanus of the Murray-Darling drainage and coastal...
Authors
Stuart A. Welsh, Dean R. Jerry, Damien Burrows, Meaghan L. Rourke

Comparison of American Fisheries Society (AFS) standard fish sampling techniques and environmental DNA for characterizing fish communities in a large reservoir Comparison of American Fisheries Society (AFS) standard fish sampling techniques and environmental DNA for characterizing fish communities in a large reservoir

Recently, methods involving examination of environmental DNA (eDNA) have shown promise for characterizing fish species presence and distribution in waterbodies. We evaluated the use of eDNA for standard fish monitoring surveys in a large reservoir. Specifically, we compared the presence, relative abundance, biomass, and relative percent composition of Largemouth Bass Micropterus...
Authors
Christina R. Perez, Scott A. Bonar, Jon J. Amberg, Bridget Ladell, Christopher B. Rees, William T. Stewart, Curtis J. Gill, Chris Cantrell, Anthony Robinson

Tributary use by imperiled Flannelmouth and Bluehead Suckers in the upper Colorado River Basin Tributary use by imperiled Flannelmouth and Bluehead Suckers in the upper Colorado River Basin

Habitat alterations and establishment of nonnative fishes have reduced the distributions of Flannelmouth Sucker Catostomus latipinnis and Bluehead Sucker C. discobolus to less than 50% of their historical ranges in the Colorado River basin. Tributaries are sometimes less altered than main-stem habitat in the basin and may be important to support various life history processes, but their...
Authors
Gregory S. Fraser, Dana L. Winkelman, Kevin R. Bestgen, Kevin G. Thompson

Use of spatial capture–recapture to estimate density of Andean bears in northern Ecuador Use of spatial capture–recapture to estimate density of Andean bears in northern Ecuador

The Andean bear (Tremarctos ornatus) is the only extant species of bear in South America and is considered threatened across its range and endangered in Ecuador. Habitat loss and fragmentation is considered a critical threat to the species, and there is a lack of knowledge regarding its distribution and abundance. The species is thought to occur at low densities, making field studies...
Authors
Santiago Molina, Angela K. Fuller, Dana J. Morin, J. Andrew Royle

Lake nutrient stoichiometry is less predictable than nutrient concentrations at regional and sub-continental scales Lake nutrient stoichiometry is less predictable than nutrient concentrations at regional and sub-continental scales

Production in many ecosystems is co-limited by multiple elements. While a known suite of drivers associated with nutrient sources, nutrient transport, and internal processing controls concentrations of phosphorus (P) and nitrogen (N) in lakes, much less is known about whether the drivers of single nutrient concentrations can also explain spatial or temporal variation in lake N:P...
Authors
Sarah M. Collins, Samantha K. Oliver, Jean-Francois Lapierre, Emily H. Stanley, John R. Jones, Tyler Wagner, Patricia A. Soranno

Assessment of phytoplankton resources suitable for bigheaded carps in Lake Michigan derived from remote sensing and bioenergetics Assessment of phytoplankton resources suitable for bigheaded carps in Lake Michigan derived from remote sensing and bioenergetics

We used bioenergetic simulations combined with satellite-measured water temperature and estimates of algal food availability to predict the habitat suitability of Lake Michigan for adult silver carp (Hypophthalmichthys molitrix) and bighead carp (H. nobilis). Depending on water temperature, we found that bigheaded carp require ambient algal concentrations between 1 and 7 μg chlorophyll/L...
Authors
Karl R. Anderson, Duane Chapman, Tim T. Wynne, Craig P. Paukert

Acute toxicity of polyacrylamide flocculants to early life stages of freshwater mussels Acute toxicity of polyacrylamide flocculants to early life stages of freshwater mussels

Polyacrylamide has become an effective tool for reducing construction-related suspended sediment and turbidity, which are considered to have significant adverse impacts on aquatic ecosystems and are a leading cause of the degradation of North American streams and rivers. However, little is known about the effects of polyacrylamide on many freshwater organisms, and prior to the present...
Authors
Sean B. Buczek, W. Gregory Cope, Richard A. McLaughlin, Thomas J. Kwak
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