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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. 

 

**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 5123

Tropical insular fish assemblages are resilient to flood disturbance Tropical insular fish assemblages are resilient to flood disturbance

Periods of stable environmental conditions, favoring development of ecological communities regulated by density-dependent processes, are interrupted by random periods of disturbance that may restructure communities. Disturbance may affect populations via habitat alteration, mortality, or displacement. We quantified fish habitat conditions, density, and movement before and after a major...
Authors
William E. Smith, Thomas J. Kwak

Ecological effects of the harvest phase of geoduck clam (Panopea generosa Gould, 1850) aquaculture on infaunal communities in southern Puget Sound, Washington USA. Ecological effects of the harvest phase of geoduck clam (Panopea generosa Gould, 1850) aquaculture on infaunal communities in southern Puget Sound, Washington USA.

Intertidal aquaculture for geoducks (Panopea generosa Gould, 1850) is expanding in southern Puget Sound, Washington, where gently sloping sandy beaches are used for field culture. Geoduck aquaculture contributes significantly to the regional economy, but has become controversial because of a range of unresolved questions involving potential biological impacts on marine ecosystems. From...
Authors
Glenn R. VanBlaricom, Jennifer L. Eccles, Julian D. Olden, P. Sean Mcdonald

Day-roost tree selection by northern long-eared bats - What do non-roost tree comparisons and one year of data really tell us? Day-roost tree selection by northern long-eared bats - What do non-roost tree comparisons and one year of data really tell us?

Bat day-roost selection often is described through comparisons of day-roosts with randomly selected, and assumed unused, trees. Relatively few studies, however, look at patterns of multi-year selection or compare day-roosts used across years. We explored day-roost selection using 2 years of roost selection data for female northern long-eared bats (Myotis septentrionalis) on the Fort Knox...
Authors
Alexander Silvis, W. Mark Ford, Eric R. Britzke

Bayesian models: A statistical primer for ecologists Bayesian models: A statistical primer for ecologists

Bayesian modeling has become an indispensable tool for ecological research because it is uniquely suited to deal with complexity in a statistically coherent way. This textbook provides a comprehensive and accessible introduction to the latest Bayesian methods—in language ecologists can understand. Unlike other books on the subject, this one emphasizes the principles behind the...
Authors
N. Thompson Hobbs, Mevin Hooten

Duckling survival, fecundity, and habitat selection of mottled duck broods on the upper Texas Gulf Coast Duckling survival, fecundity, and habitat selection of mottled duck broods on the upper Texas Gulf Coast

Mottled ducks (Anas fulvigula) on the western Gulf Coast have exhibited a steep population decline since the mid 1990s. Low rates of breeding incidence and nest success have been implicated in this decline, but duckling survival and the habitat needs of broods have not been previously investigated in this region. We fitted mottled duck ducklings and adult females with radio transmitters...
Authors
Elizabeth A. Rigby, David A. Haukos

Accounting for imperfect detection in Hill numbers for biodiversity studies Accounting for imperfect detection in Hill numbers for biodiversity studies

Hill numbers unify biodiversity metrics by combining several into one expression. For example, species richness, Shannon's diversity index and the Gini–Simpson index are a few of the most used diversity measures, and they can be expressed as Hill numbers. Traditionally, Hill numbers have been calculated from relative abundance data, but the expression has been modified to use incidence...
Authors
Kristin M. Broms, Mevin Hooten, Ryan M. Fitzpatrick

Variables associated with nest survival of Golden-winged Warblers (Vermivora chrysoptera) among vegetation communities commonly used for nesting Variables associated with nest survival of Golden-winged Warblers (Vermivora chrysoptera) among vegetation communities commonly used for nesting

Among shrubland- and young forest-nesting bird species in North America, Golden-winged Warblers (Vermivora chrysoptera) are one of the most rapidly declining partly because of limited nesting habitat. Creation and management of high quality vegetation communities used for nesting are needed to reduce declines. Thus, we examined whether common characteristics could be managed across much...
Authors
Kyle R. Aldinger, Theron M. Terhune, Petra Bohall Wood, David A. Buehler, Marja H. Bakermans,  John L. Confer, David J. Flaspohler, Jeffrey L. Larkin, John P. Loegering, Katie L. Percy, Amber M. Roth, Curtis G. Smalling

Range-wide wetland associations of the King Rail: A multi-scale approach Range-wide wetland associations of the King Rail: A multi-scale approach

King Rail populations have declined and identifying wetland features that influence King Rail occupancy can help prevent further population declines. We integrated continent-wide marsh bird survey data with spatial wetland data from the National Wetland Inventory (NWI) to examine wetland features that influenced King Rail occupancy throughout the species’ range. We analyzed wetland data...
Authors
Wesley J. Glisson, Courtney J. Conway, Christopher P. Nadeau, Kathi L. Borgmann, Thomas A. Laxson

Using hierarchical Bayesian multi-species mixture models to estimate tandem hoop-net based habitat associations and detection probabilities of fishes in reservoirs Using hierarchical Bayesian multi-species mixture models to estimate tandem hoop-net based habitat associations and detection probabilities of fishes in reservoirs

Species distribution models are useful tools to evaluate habitat relationships of fishes. We used hierarchical Bayesian multispecies mixture models to evaluate the relationships of both detection and abundance with habitat of reservoir fishes caught using tandem hoop nets. A total of 7,212 fish from 12 species were captured, and the majority of the catch was composed of Channel Catfish...
Authors
David R. Stewart, James M. Long

State-space modeling to support management of brucellosis in the Yellowstone bison population State-space modeling to support management of brucellosis in the Yellowstone bison population

The bison (Bison bison) of the Yellowstone ecosystem, USA, exemplify the difficulty of conserving large mammals that migrate across the boundaries of conservation areas. Bison are infected with brucellosis (Brucella abortus) and their seasonal movements can expose livestock to infection. Yellowstone National Park has embarked on a program of adaptive management of bison, which requires a...
Authors
N. Thompson Hobbs, Chris Geremia, John Treanor, Rick Wallen, P.J. White, Mevin Hooten, Jack C. Rhyan

Toward a mechanistic understanding of human-induced rapid environmental change: A case study linking energy development, avian nest predation, and predators Toward a mechanistic understanding of human-induced rapid environmental change: A case study linking energy development, avian nest predation, and predators

Demographic consequences of human-induced rapid environmental change (HIREC) have been widely documented for many populations. The mechanisms underlying such patterns, however, are rarely investigated and yet are critical to understand for effective conservation and management. We investigated the mechanisms underlying reduced avian nest survival with intensification of natural gas...
Authors
Matthew G. Hethcoat, Anna D. Chalfoun
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