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Worldwide phylogenetic relationship of avian poxviruses

March 14, 2013

Poxvirus infections have been found in 230 species of wild and domestic birds worldwide in both terrestrial and marine environments. This ubiquity raises the question of how infection has been transmitted and globally dispersed. We present a comprehensive global phylogeny of 111 novel poxvirus isolates in addition to all available sequences from GenBank. Phylogenetic analysis of the Avipoxvirus genus has traditionally relied on one gene region (4b core protein). In this study we expanded the analyses to include a second locus (DNA polymerase gene), allowing for a more robust phylogenetic framework, finer genetic resolution within specific groups, and the detection of potential recombination. Our phylogenetic results reveal several major features of avipoxvirus evolution and ecology and propose an updated avipoxvirus taxonomy, including three novel subclades. The characterization of poxviruses from 57 species of birds in this study extends the current knowledge of their host range and provides the first evidence of the phylogenetic effect of genetic recombination of avipoxviruses. The repeated occurrence of avian family or order-specific grouping within certain clades (e.g., starling poxvirus, falcon poxvirus, raptor poxvirus, etc.) indicates a marked role of host adaptation, while the sharing of poxvirus species within prey-predator systems emphasizes the capacity for cross-species infection and limited host adaptation. Our study provides a broad and comprehensive phylogenetic analysis of the Avipoxvirus genus, an ecologically and environmentally important viral group, to formulate a genome sequencing strategy that will clarify avipoxvirus taxonomy.

Publication Year 2013
Title Worldwide phylogenetic relationship of avian poxviruses
DOI 10.1128/JVI.03183-12
Authors Miklós Gyuranecz, Jeffrey T. Foster, Ádám Dán, Hon S. Ip, Kristina F. Egstad, Patricia G. Parker, Jenni M. Higashiguchi, Michael A. Skinner, Ursula Höfle, Zsuzsa Kreizinger, Gerry M. Dorrestein, Szabolcs Solt, Endre Sós, Young Jun Kim, Marcela Uhart, Ariel Pereda, Gisela González-Hein, Hector Hidalgo, Juan-Manuel Blanco, Károly Erdélyi
Publication Type Article
Publication Subtype Journal Article
Series Title Journal of Virology
Index ID 70044604
Record Source USGS Publications Warehouse
USGS Organization National Wildlife Health Center