Code to fit Integral Projection Models and simulate population reintroductions for San Francisco Gartersnakes, Thamnophis sirtalis tetrataenia
August 30, 2023
This repository contains code to fit Integral Projection Models and simulate population reintroductions for San Francisco gartersnakes (Thamnophis sirtalis tetrataenia)
This repository specifically contains code to reproduce analyses in:
Rose, J.P., Kim, R., Schoenig, E.J., Lien, P.C., and Halstead, B.J. in-review. Comparing reintroduction strategies for the endangered San Francisco gartersnake (Thamnophis sirtalis tetrataenia) using demographic models. In review DOI forthcoming
WARNING
Reproducing all simulations below will take several hours to run. Estimated runtime is 32 hours on a cpu from 2021.
You can reduce n.mcmc to speed up functions but this may produce results different from manuscript if too small a sample is used.
This repository specifically contains code to reproduce analyses in:
Rose, J.P., Kim, R., Schoenig, E.J., Lien, P.C., and Halstead, B.J. in-review. Comparing reintroduction strategies for the endangered San Francisco gartersnake (Thamnophis sirtalis tetrataenia) using demographic models. In review DOI forthcoming
WARNING
Reproducing all simulations below will take several hours to run. Estimated runtime is 32 hours on a cpu from 2021.
You can reduce n.mcmc to speed up functions but this may produce results different from manuscript if too small a sample is used.
Citation Information
| Publication Year | 2023 |
|---|---|
| Title | Code to fit Integral Projection Models and simulate population reintroductions for San Francisco Gartersnakes, Thamnophis sirtalis tetrataenia |
| DOI | 10.5066/P9EY889F |
| Authors | Jonathan P Rose, Richard Kim, Elliot J Schoenig, Patrick C Lien, Brian J Halstead |
| Product Type | Software Release |
| Record Source | USGS Asset Identifier Service (AIS) |
| USGS Organization | Western Ecological Research Center - Headquarters |
Related
Comparing reintroduction strategies for the endangered San Francisco gartersnake (Thamnophis sirtalis tetrataenia) using demographic models
For endangered species persisting in a few populations, reintroductions to unoccupied habitat are a popular conservation action to increase viability in the long term. Identifying the reintroduction strategy that is most likely to result in viable founder and donor populations is essential to optimally use resources available for conservation. The San Francisco gartersnake (Thamnophis...
Authors
Jonathan P. Rose, Richard Kim, Elliot J. Schoenig, Patrick C. Lien, Brian J. Halstead
Related
Comparing reintroduction strategies for the endangered San Francisco gartersnake (Thamnophis sirtalis tetrataenia) using demographic models
For endangered species persisting in a few populations, reintroductions to unoccupied habitat are a popular conservation action to increase viability in the long term. Identifying the reintroduction strategy that is most likely to result in viable founder and donor populations is essential to optimally use resources available for conservation. The San Francisco gartersnake (Thamnophis...
Authors
Jonathan P. Rose, Richard Kim, Elliot J. Schoenig, Patrick C. Lien, Brian J. Halstead