Melanie Culver, PhD (Former Employee)
Science and Products
Filter Total Items: 46
Tracking the desert's edge with a Pleistocene relict Tracking the desert's edge with a Pleistocene relict
In addition to the Sky Islands of the southwestern U.S. and northwestern Mexico, a series of 900–1200 m desert peaks surrounded by arid lowlands support temperate affiliated species at their summits. The presence of disjunct long-lived plant taxa on under-explored desert mountains, especially Isla Tiburón at 29° latitude in the Gulf of California, suggests a more southerly extent of Ice...
Authors
Benjamin T. Wilder, Amanda T. Becker, Adrian Munguia-Vega, Melanie Culver
Genetic diversity and structure in Arizona pronghorn following conservation efforts Genetic diversity and structure in Arizona pronghorn following conservation efforts
Arizona pronghorn (Antilocapra americana) population numbers have declined over the last century due to unregulated-harvest, population fragmentation, urban expansion, and habitat loss. Captive breeding, reintroductions, and translocations have helped to curb decline and boost population numbers of the endangered Sonoran subspecies (A. a. sonoriensis). To assess the effect of on-going...
Authors
Erin E. Vaughn, Melanie Culver
Augmentation of natural prey reduces cattle predation by puma (Puma concolor) and jaguar (Panthera onca) on a ranch in Sonora, Mexico Augmentation of natural prey reduces cattle predation by puma (Puma concolor) and jaguar (Panthera onca) on a ranch in Sonora, Mexico
Retaliatory killing of large carnivores due to livestock predation is one of the major threats for the conservation of many declining populations of predators. According to empirical observations, there is a higher incidence of livestock predation when native prey abundance is low. In this study, we applied a treatment consisting of augmentation of prey abundance by translocation of...
Authors
Ivonne Cassaigne, Ron W. Thompson, Rodrigo A. Medellin, Melanie Culver, Alexander Ochoa, Karla Vargas, Jack L. Childs, Manuel Galaz, Jim Sanderson
PumaPlex100: An expanded tool for puma SNP genotyping with low-yield DNA PumaPlex100: An expanded tool for puma SNP genotyping with low-yield DNA
The original PumaPlex is a high-throughput assay developed to genotype 25 single nucleotide polymorphisms (SNPs) in pumas (Puma concolor). Here, we describe the development of PumaPlex100 – an expanded version of the original assay that now genotypes > 100 SNPs. We tested 142 candidate SNPs and developed a panel of 101 polymorphic loci, which are spread across four multiplexes and...
Authors
John A. Erwin, Robert R. Fitak, Melanie Culver
Use of museum specimens to refine historical pronghorn subspecies boundaries Use of museum specimens to refine historical pronghorn subspecies boundaries
Endangered Sonoran (Antilocapra americana sonoriensis) and Peninsular (A. a. peninsularis) pronghorn persist largely because of captive breeding and reintroduction efforts. Recovery team managers want to re-establish pronghorn in their native range, but there is currently uncertainty regarding the subspecies status of extinct pronghorn populations that historically inhabited southern...
Authors
Erin E. Hahn, Anastasia Klimova, Adrian Munguia-Vega, Kevin B. Clark, Melanie Culver
De novo assembly and annotation from parental and F1 puma genomes of the Florida panther genetic restoration program De novo assembly and annotation from parental and F1 puma genomes of the Florida panther genetic restoration program
In the mid-1990s, the population size of Florida panthers became so small that many individuals manifested traits associated with inbreeding depression (e.g., heart defects, cryptorchidism, high pathogen-parasite load). To mitigate these effects, pumas from Texas were introduced into South Florida to augment genetic variation in Florida panthers. In this study, we report a de novo puma...
Authors
Alexander Ochoa, David P Onorato, Robert R. Fitak, Melody Roelke-Parker, Melanie Culver
Genetic variation among island and continental populations of Burrowing Owl (Athene cunicularia) subspecies in North America Genetic variation among island and continental populations of Burrowing Owl (Athene cunicularia) subspecies in North America
Burrowing Owls (Athene cunicularia) have a large geographic range spanning both North and South America and resident populations occur on many islands in the eastern Pacific Ocean and the Caribbean Sea. Many owl populations are isolated and disjunct from other populations, but studies on genetic variation within and among populations are limited. We characterized DNA microsatellite...
Authors
Alberto Macias-Duarte, Courtney J. Conway, Geoffrey L. Holroyd, Hector E. Valdez-Gomez, Melanie Culver
Genetic assessment of a bighorn sheep population expansion in the Silver Bell Mountains, Arizona Genetic assessment of a bighorn sheep population expansion in the Silver Bell Mountains, Arizona
Background: The isolated population of desert bighorn sheep in the Silver Bell Mountains of southern Arizona underwent an unprecedented expansion in merely four years. We hypothesized that immigration from neighboring bighorn sheep populations could have caused the increase in numbers as detected by Arizona Game and Fish Department annual aerial counts. Methods: We applied a multilocus...
Authors
John A. Erwin, Karla Vargasc, Brian R. Blaisc, Kendell Bennettc, Julia Muldoond, Sarah Findysz, Courtney Christiec, James R. Heffelfingere, Melanie Culver
Genome-wide analysis of SNPs is consistent with no domestic dog ancestry in the endangered Mexican Wolf (Canis lupus baileyi) Genome-wide analysis of SNPs is consistent with no domestic dog ancestry in the endangered Mexican Wolf (Canis lupus baileyi)
The Mexican gray wolf (Canis lupus baileyi) was historically distributed throughout the southwestern United States and northern Mexico. Extensive predator removal campaigns during the early 20th century, however, resulted in its eventual extirpation by the mid 1980s. At this time, the Mexican wolf existed only in 3 separate captive lineages (McBride, Ghost Ranch, and Aragón) descended...
Authors
Robert R. Fitak, Sarah E. Rinkevich, Melanie Culver
Evolutionary and functional mitogenomics associated with the genetic restoration of the Florida panther Evolutionary and functional mitogenomics associated with the genetic restoration of the Florida panther
Florida panthers are endangered pumas that currently persist in reduced patches of habitat in South Florida, USA. We performed mitogenome reference-based assemblies for most parental lines of the admixed Florida panthers that resulted from the introduction of female Texas pumas into South Florida in 1995. With the addition of 2 puma mitogenomes, we characterized 174 single nucleotide...
Authors
Alexander Ochoa, David P. Onorato, Robert R. Fitak, Melody Roelke-Parker, Melanie Culver
Diet of pumas (Puma concolor) in Sonora, Mexico, as determined by GPS kill sites and molecular identified scat, with comments on jaguar (Panthera onca) diet Diet of pumas (Puma concolor) in Sonora, Mexico, as determined by GPS kill sites and molecular identified scat, with comments on jaguar (Panthera onca) diet
We documented puma (Puma concolor) and jaguar (Panthera onca) prey consumption in northeastern Sonora, Mexico, by investigating global positioning system cluster sites (n = 220), and conducting molecular analyses of scat (n = 116) collected between 2011 and 2013. We used camera trap data (n = 8,976 camera days) to estimate relative abundances of pumas and jaguars. Deer (Odocoileus...
Authors
Ivonne Cassaigne, Rodrigo A. Medellin, Ron W. Thompson, Melanie Culver, Alexander Ochoa, Karla Vargas, Jack L. Childs, Jim Sanderson, Rurik List, Armando Torres-Gomez
Jaguar taxonomy and genetic diversity for southern Arizona, United States, and Sonora, Mexico Jaguar taxonomy and genetic diversity for southern Arizona, United States, and Sonora, Mexico
Executive Summary The jaguar is the largest Neotropical felid and the only extant representative of the genus Panthera in the Americas. In recorded history, the jaguars range has extended from the Southern United States, throughout Mexico, to Central and South America, and they occupy a wide variety of habitats. A previous jaguar genetic study found high historical levels of gene flow...
Authors
Melanie Culver, Alexander Ochoa Hein
Science and Products
Filter Total Items: 46
Tracking the desert's edge with a Pleistocene relict Tracking the desert's edge with a Pleistocene relict
In addition to the Sky Islands of the southwestern U.S. and northwestern Mexico, a series of 900–1200 m desert peaks surrounded by arid lowlands support temperate affiliated species at their summits. The presence of disjunct long-lived plant taxa on under-explored desert mountains, especially Isla Tiburón at 29° latitude in the Gulf of California, suggests a more southerly extent of Ice...
Authors
Benjamin T. Wilder, Amanda T. Becker, Adrian Munguia-Vega, Melanie Culver
Genetic diversity and structure in Arizona pronghorn following conservation efforts Genetic diversity and structure in Arizona pronghorn following conservation efforts
Arizona pronghorn (Antilocapra americana) population numbers have declined over the last century due to unregulated-harvest, population fragmentation, urban expansion, and habitat loss. Captive breeding, reintroductions, and translocations have helped to curb decline and boost population numbers of the endangered Sonoran subspecies (A. a. sonoriensis). To assess the effect of on-going...
Authors
Erin E. Vaughn, Melanie Culver
Augmentation of natural prey reduces cattle predation by puma (Puma concolor) and jaguar (Panthera onca) on a ranch in Sonora, Mexico Augmentation of natural prey reduces cattle predation by puma (Puma concolor) and jaguar (Panthera onca) on a ranch in Sonora, Mexico
Retaliatory killing of large carnivores due to livestock predation is one of the major threats for the conservation of many declining populations of predators. According to empirical observations, there is a higher incidence of livestock predation when native prey abundance is low. In this study, we applied a treatment consisting of augmentation of prey abundance by translocation of...
Authors
Ivonne Cassaigne, Ron W. Thompson, Rodrigo A. Medellin, Melanie Culver, Alexander Ochoa, Karla Vargas, Jack L. Childs, Manuel Galaz, Jim Sanderson
PumaPlex100: An expanded tool for puma SNP genotyping with low-yield DNA PumaPlex100: An expanded tool for puma SNP genotyping with low-yield DNA
The original PumaPlex is a high-throughput assay developed to genotype 25 single nucleotide polymorphisms (SNPs) in pumas (Puma concolor). Here, we describe the development of PumaPlex100 – an expanded version of the original assay that now genotypes > 100 SNPs. We tested 142 candidate SNPs and developed a panel of 101 polymorphic loci, which are spread across four multiplexes and...
Authors
John A. Erwin, Robert R. Fitak, Melanie Culver
Use of museum specimens to refine historical pronghorn subspecies boundaries Use of museum specimens to refine historical pronghorn subspecies boundaries
Endangered Sonoran (Antilocapra americana sonoriensis) and Peninsular (A. a. peninsularis) pronghorn persist largely because of captive breeding and reintroduction efforts. Recovery team managers want to re-establish pronghorn in their native range, but there is currently uncertainty regarding the subspecies status of extinct pronghorn populations that historically inhabited southern...
Authors
Erin E. Hahn, Anastasia Klimova, Adrian Munguia-Vega, Kevin B. Clark, Melanie Culver
De novo assembly and annotation from parental and F1 puma genomes of the Florida panther genetic restoration program De novo assembly and annotation from parental and F1 puma genomes of the Florida panther genetic restoration program
In the mid-1990s, the population size of Florida panthers became so small that many individuals manifested traits associated with inbreeding depression (e.g., heart defects, cryptorchidism, high pathogen-parasite load). To mitigate these effects, pumas from Texas were introduced into South Florida to augment genetic variation in Florida panthers. In this study, we report a de novo puma...
Authors
Alexander Ochoa, David P Onorato, Robert R. Fitak, Melody Roelke-Parker, Melanie Culver
Genetic variation among island and continental populations of Burrowing Owl (Athene cunicularia) subspecies in North America Genetic variation among island and continental populations of Burrowing Owl (Athene cunicularia) subspecies in North America
Burrowing Owls (Athene cunicularia) have a large geographic range spanning both North and South America and resident populations occur on many islands in the eastern Pacific Ocean and the Caribbean Sea. Many owl populations are isolated and disjunct from other populations, but studies on genetic variation within and among populations are limited. We characterized DNA microsatellite...
Authors
Alberto Macias-Duarte, Courtney J. Conway, Geoffrey L. Holroyd, Hector E. Valdez-Gomez, Melanie Culver
Genetic assessment of a bighorn sheep population expansion in the Silver Bell Mountains, Arizona Genetic assessment of a bighorn sheep population expansion in the Silver Bell Mountains, Arizona
Background: The isolated population of desert bighorn sheep in the Silver Bell Mountains of southern Arizona underwent an unprecedented expansion in merely four years. We hypothesized that immigration from neighboring bighorn sheep populations could have caused the increase in numbers as detected by Arizona Game and Fish Department annual aerial counts. Methods: We applied a multilocus...
Authors
John A. Erwin, Karla Vargasc, Brian R. Blaisc, Kendell Bennettc, Julia Muldoond, Sarah Findysz, Courtney Christiec, James R. Heffelfingere, Melanie Culver
Genome-wide analysis of SNPs is consistent with no domestic dog ancestry in the endangered Mexican Wolf (Canis lupus baileyi) Genome-wide analysis of SNPs is consistent with no domestic dog ancestry in the endangered Mexican Wolf (Canis lupus baileyi)
The Mexican gray wolf (Canis lupus baileyi) was historically distributed throughout the southwestern United States and northern Mexico. Extensive predator removal campaigns during the early 20th century, however, resulted in its eventual extirpation by the mid 1980s. At this time, the Mexican wolf existed only in 3 separate captive lineages (McBride, Ghost Ranch, and Aragón) descended...
Authors
Robert R. Fitak, Sarah E. Rinkevich, Melanie Culver
Evolutionary and functional mitogenomics associated with the genetic restoration of the Florida panther Evolutionary and functional mitogenomics associated with the genetic restoration of the Florida panther
Florida panthers are endangered pumas that currently persist in reduced patches of habitat in South Florida, USA. We performed mitogenome reference-based assemblies for most parental lines of the admixed Florida panthers that resulted from the introduction of female Texas pumas into South Florida in 1995. With the addition of 2 puma mitogenomes, we characterized 174 single nucleotide...
Authors
Alexander Ochoa, David P. Onorato, Robert R. Fitak, Melody Roelke-Parker, Melanie Culver
Diet of pumas (Puma concolor) in Sonora, Mexico, as determined by GPS kill sites and molecular identified scat, with comments on jaguar (Panthera onca) diet Diet of pumas (Puma concolor) in Sonora, Mexico, as determined by GPS kill sites and molecular identified scat, with comments on jaguar (Panthera onca) diet
We documented puma (Puma concolor) and jaguar (Panthera onca) prey consumption in northeastern Sonora, Mexico, by investigating global positioning system cluster sites (n = 220), and conducting molecular analyses of scat (n = 116) collected between 2011 and 2013. We used camera trap data (n = 8,976 camera days) to estimate relative abundances of pumas and jaguars. Deer (Odocoileus...
Authors
Ivonne Cassaigne, Rodrigo A. Medellin, Ron W. Thompson, Melanie Culver, Alexander Ochoa, Karla Vargas, Jack L. Childs, Jim Sanderson, Rurik List, Armando Torres-Gomez
Jaguar taxonomy and genetic diversity for southern Arizona, United States, and Sonora, Mexico Jaguar taxonomy and genetic diversity for southern Arizona, United States, and Sonora, Mexico
Executive Summary The jaguar is the largest Neotropical felid and the only extant representative of the genus Panthera in the Americas. In recorded history, the jaguars range has extended from the Southern United States, throughout Mexico, to Central and South America, and they occupy a wide variety of habitats. A previous jaguar genetic study found high historical levels of gene flow...
Authors
Melanie Culver, Alexander Ochoa Hein