Atlantic sturgeon genetic assignment testing assigns individuals to populations and is combined with life history data to present a comprehensive view of the species.
Following decades of declines, Atlantic Sturgeon were listed under the Endangered Species Act in 2012. Based on available genetic information, the species was broken into five Distinct Population Segments (DPSs). The DPSs are predicated on geographic clusters of their spawning rivers delineated by zones of genetic discontinuity. However, Atlantic Sturgeon move extensively in coastal waters, and there is a critical need to be able to distinguish among management units when individuals are encountered away from natal areas. This information is vital for gaining insights into the ecology of Atlantic Sturgeon, understanding the impacts of human activities on specific stocks, and tracking recovery progress. Moreover, federal regulations require certain Atlantic Sturgeon captured during research activities or collected as incidental take to be assigned to a DPS so that take can be appropriately partitioned among management units (under the Endangered Species Act, each DPS is essentially treated as a unique species, so knowing which DPS is affected by an action is critical). In addition, the recent rediscovery of populations of Atlantic Sturgeon that were formerly thought to be extirpated necessitates that additional population genetic studies be conducted to place these populations into context and incorporated into the genetic baseline, as well as ensure appropriate management strategies can be developed.
In marine and estuarine environments, Atlantic Sturgeon often form mixed-stock assemblages where they are subject to fisheries bycatch and other threats to their recovery. Determination of the lineage or river-of-origin among individuals in coastal aggregations has been identified as a high priority research objective. EESC biologists are conducting individual based assignment testing to resolve the composition of mixed stock aggregations of Atlantic Sturgeon found at key sites along the Atlantic Coast to inform management decisions. EESC biologists are also comparing the genetics of newly rediscovered populations of Atlantic sturgeon to previously documented populations, to evaluate if they fit within the genetic clusters that are the basis for the current DPS management system. These studies provide valuable information on the DPS of origin for Atlantic Sturgeon encountered during permitted activities.
There is limited knowledge of the status of many Atlantic sturgeon populations. EESC are using genetics in several ways to help characterize and enumerate spawning runs in several rivers. In a recent publication, EESC biologists used pedigree-reconstruction to infer the number of adult sturgeon which spawn annually in the Delaware River. In addition, EESC provides technical expertise and genetic data to support the ASMFC stock assessment process for Atlantic Sturgeon.
Finally, the migratory corridors used by Atlantic Sturgeon are not well understood, and additional information is needed to understand when and where specific populations are found so that the impacts of anthropogenic activities can be predicted. EESC biologists are working to combine telemetry and genetic data to resolve the coastwide migratory corridors of Atlantic Sturgeon populations. This approach is tractable through collaborations with numerous outside agencies and the use of our genetic baseline for assignment testing. The USGS EESC is well positioned to conduct this research, based on our extensive network of partners in the sturgeon research community, a microsatellite genetic baseline that we have developed for assignment testing, and our stewardship of the Atlantic Coast Sturgeon Tissue Research Repository.
Genotypes of Atlantic Sturgeon collected from Canada to Georgia used in the development of a genetic baseline
Evaluating sources of bias in pedigree-based estimates of breeding population size
Stock composition of the historical New York Bight Atlantic sturgeon (Acipenser oxyrinchus oxyrinchus) intercept fishery revealed through microsatellite analysis of archived spines
Establishment of a microsatellite genetic baseline for North American Atlantic sturgeon (Acipenser o. oxyrhinchus) and range-wide analysis of population genetics
Atlantic sturgeon status and movement ecology in an extremely small spawning habitat: The Nanticoke River-Marshyhope Creek, Chesapeake Bay
Stock composition of Atlantic sturgeon (Acipenser oxyrinchus oxyrinchus) encountered in marine and estuarine environments on the U.S. Atlantic Coast
Integrating side-scan sonar and acoustic telemetry to estimate the annual spawning run size of Atlantic sturgeon in the Hudson River
- Overview
Atlantic sturgeon genetic assignment testing assigns individuals to populations and is combined with life history data to present a comprehensive view of the species.
Dr. Dave Kazyak prepares to release an adult Atlantic Sturgeon prior to release as part of a collaborative research effort. Following decades of declines, Atlantic Sturgeon were listed under the Endangered Species Act in 2012. Based on available genetic information, the species was broken into five Distinct Population Segments (DPSs). The DPSs are predicated on geographic clusters of their spawning rivers delineated by zones of genetic discontinuity. However, Atlantic Sturgeon move extensively in coastal waters, and there is a critical need to be able to distinguish among management units when individuals are encountered away from natal areas. This information is vital for gaining insights into the ecology of Atlantic Sturgeon, understanding the impacts of human activities on specific stocks, and tracking recovery progress. Moreover, federal regulations require certain Atlantic Sturgeon captured during research activities or collected as incidental take to be assigned to a DPS so that take can be appropriately partitioned among management units (under the Endangered Species Act, each DPS is essentially treated as a unique species, so knowing which DPS is affected by an action is critical). In addition, the recent rediscovery of populations of Atlantic Sturgeon that were formerly thought to be extirpated necessitates that additional population genetic studies be conducted to place these populations into context and incorporated into the genetic baseline, as well as ensure appropriate management strategies can be developed.
In marine and estuarine environments, Atlantic Sturgeon often form mixed-stock assemblages where they are subject to fisheries bycatch and other threats to their recovery. Determination of the lineage or river-of-origin among individuals in coastal aggregations has been identified as a high priority research objective. EESC biologists are conducting individual based assignment testing to resolve the composition of mixed stock aggregations of Atlantic Sturgeon found at key sites along the Atlantic Coast to inform management decisions. EESC biologists are also comparing the genetics of newly rediscovered populations of Atlantic sturgeon to previously documented populations, to evaluate if they fit within the genetic clusters that are the basis for the current DPS management system. These studies provide valuable information on the DPS of origin for Atlantic Sturgeon encountered during permitted activities.
There is limited knowledge of the status of many Atlantic sturgeon populations. EESC are using genetics in several ways to help characterize and enumerate spawning runs in several rivers. In a recent publication, EESC biologists used pedigree-reconstruction to infer the number of adult sturgeon which spawn annually in the Delaware River. In addition, EESC provides technical expertise and genetic data to support the ASMFC stock assessment process for Atlantic Sturgeon.
Finally, the migratory corridors used by Atlantic Sturgeon are not well understood, and additional information is needed to understand when and where specific populations are found so that the impacts of anthropogenic activities can be predicted. EESC biologists are working to combine telemetry and genetic data to resolve the coastwide migratory corridors of Atlantic Sturgeon populations. This approach is tractable through collaborations with numerous outside agencies and the use of our genetic baseline for assignment testing. The USGS EESC is well positioned to conduct this research, based on our extensive network of partners in the sturgeon research community, a microsatellite genetic baseline that we have developed for assignment testing, and our stewardship of the Atlantic Coast Sturgeon Tissue Research Repository.
- Data
Genotypes of Atlantic Sturgeon collected from Canada to Georgia used in the development of a genetic baseline
This dataset includes microsatellite genotypes for 2510 Atlantic sturgeon from 18 different populations distributed from Canada to Georgia. Each individual was genotyped at 12 loci. Additional information about sex, capture date, and size are also provided. - Publications
Evaluating sources of bias in pedigree-based estimates of breeding population size
Applications of genetic-based estimates of population size are expanding, especially for species for which traditional demographic estimation methods are intractable due to the rarity of adult encounters. Estimates of breeding population size (NS) are particularly amenable to genetic-based approaches as the parameter can be estimated using pedigrees reconstructed from genetic data gathered from diAuthorsShannon L. White, Nicholas M Sard, Harold M Brundage III, Robin L. Johnson, Barbara A. Lubinski, Michael S. Eackles, Ian A Park, Dewayne A. Fox, David C. KazyakStock composition of the historical New York Bight Atlantic sturgeon (Acipenser oxyrinchus oxyrinchus) intercept fishery revealed through microsatellite analysis of archived spines
A targeted commercial fishery for Atlantic Sturgeon Acipenser oxyrinchus oxyrinchus once operated in the New York Bight, where it was assumed that most harvested Atlantic Sturgeon were natal to the Hudson River population. However, more recent evidence suggests that the fishery may have been targeting a mixed-stock aggregation, in which case harvested Atlantic Sturgeon could have been comprised ofAuthorsShannon L. White, Robin L. Johnson, Barbara A. Lubinski, Michael S. Eackles, David H. Secor, David C. KazyakEstablishment of a microsatellite genetic baseline for North American Atlantic sturgeon (Acipenser o. oxyrhinchus) and range-wide analysis of population genetics
Atlantic sturgeon (Acipenser oxyrinchus oxyrinchus) is a long-lived, anadromous species that is broadly distributed along the Atlantic coast of North America. Historic overharvest and habitat degradation resulted in significant declines to Atlantic sturgeon populations and, following decades of limited recovery, the species was listed under the Endangered Species Act of the United States in 2012.AuthorsShannon L. White, David C. Kazyak, Tanya L Darden, Daniel J Farrae, Barbara A. Lubinski, Robin L. Johnson, Michael S. Eackles, M Balazik, Hal Brundage, Adam G Fox, Dewayne A. Fox, Chris H Hager, Jason E Kahn, Isaac I WirginAtlantic sturgeon status and movement ecology in an extremely small spawning habitat: The Nanticoke River-Marshyhope Creek, Chesapeake Bay
Biotelemetry of Atlantic sturgeon Acipenser oxyrinchus oxyrinchus has exposed spawning behaviors in ever-smaller estuaries, surprising for the NW Atlantic’s largest anadromous species. Small estuary — the Nanticoke River and Marshyhope Creek (Chesapeake Bay) — spawning-run adults and their habitat affinities are described based upon direct sampling and biotelemetry for the period 2014–2018. High rAuthorsD. H. Secor, M. H. P. O'Brien, N. Coleman, A. Horne, I. Park, David C. Kazyak, D. G. Bruce, C StenceStock composition of Atlantic sturgeon (Acipenser oxyrinchus oxyrinchus) encountered in marine and estuarine environments on the U.S. Atlantic Coast
Atlantic sturgeon (Acipenser oxyrinchus oxyrinchus) is a large, anadromous fish native to the Atlantic Coast of North America. Although this species once supported important fisheries, centuries of exploitation and habitat degradation have resulted in dramatic declines, presumed extirpation in some rivers, and ultimately listing under the U.S. Endangered Species Act (ESA). Under the ESA, AtlanticAuthorsDavid C. Kazyak, Shannon L. White, Barbara A. Lubinski, Robin L. Johnson, Michael S. EacklesIntegrating side-scan sonar and acoustic telemetry to estimate the annual spawning run size of Atlantic sturgeon in the Hudson River
There is considerable interest in evaluating the status and trends of sturgeon populations, yet many traditional approaches to estimating the abundance of fishes are intractable due to their biology and rarity. Side-scan sonar has recently emerged as an effective tool for censusing sturgeon in rivers, yet challenges remain for censusing open populations that may visit specific habitats over periodAuthorsDavid C. Kazyak, Amy M Flowers, Nathan J. Hostetter, John A Madsen, Matthew W. Breece, Amanda Higgs, Lori M. Brown, Andy Royle, Dewayne A. Fox - Partners