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Publications

This is a list of publications written by Patuxent employees since Patuxent opened in 1939.  To search for Patuxent's publications by author or title, please click below to go to the USGS Publication Warehouse.

Filter Total Items: 8128

Forest structure of oak plantations after silvicultural treatment to enhance habitat for wildlife Forest structure of oak plantations after silvicultural treatment to enhance habitat for wildlife

During the past 30 years, thousands of hectares of oak-dominated bottomland hardwood plantations have been planted on agricultural fields in the Mississippi Alluvial Valley. Many of these plantations now have closed canopies and sparse understories. Silvicultural treatments could create a more heterogeneous forest structure, with canopy gaps and increased understory vegetation for...
Authors
Daniel J. Twedt, Cherrie-Lee P. Phillip, Michael P. Guilfoyle, R. Randy Wilson

Organic amendments for risk mitigation of organochlorine pesticide residues in old orchard soils Organic amendments for risk mitigation of organochlorine pesticide residues in old orchard soils

Performance of compost and biochar amendments for in situ risk mitigation of aged DDT, DDE and dieldrin residues in an old orchard soil was examined. The change in bioavailability of pesticide residues to Lumbricus terrestris L. relative to the unamended control soil was assessed using 4-L soil microcosms with and without plant cover in a 48-day experiment. The use of aged dairy manure...
Authors
Tiziana Centofantia, Laura L. McConnell, Rufus L. Chaney, W. Nelson Beyer, Natasha A. Andradea, Cathleen J. Hapeman, Alba Torrents, Anh Nguyen, Marya O. Anderson, J. M. Novak, Dana Jackson

A hidden view of wildlife conservation: How camera traps aid science, research and management A hidden view of wildlife conservation: How camera traps aid science, research and management

Florida panthers are among the world’s most endangered — and elusive — animals. For approximately four decades, scientists have been researching this small population of panthers that inhabit the dense forests and swamps of south Florida. Because of their wide habitat range along with an absence of clear visual features, these animals are difficult to detect and identify. In 2013...
Authors
Allan F. O’Connell

Spatial capture-recapture models allowing Markovian transience or dispersal Spatial capture-recapture models allowing Markovian transience or dispersal

Spatial capture–recapture (SCR) models are a relatively recent development in quantitative ecology, and they are becoming widely used to model density in studies of animal populations using camera traps, DNA sampling and other methods which produce spatially explicit individual encounter information. One of the core assumptions of SCR models is that individuals possess home ranges that...
Authors
J. Andrew Royle, Angela K. Fuller, Chris Sutherland

Taxonomic revision of Phascogale tapoatafa (Meyer, 1793) (Dasyuridae; Marsupialia), including descriptions of two new subspecies and confirmation of P. pirata Thomas, 1904 as a ‘Top End’ endemic Taxonomic revision of Phascogale tapoatafa (Meyer, 1793) (Dasyuridae; Marsupialia), including descriptions of two new subspecies and confirmation of P. pirata Thomas, 1904 as a ‘Top End’ endemic

The Australian Brush-tailed Phascogale (Phascogale tapoatafa sensu lato) has a broad but highly fragmented distribution around the periphery of the Australian continent and all populations are under significant ongoing threat to survival. A new appraisal of morphological and molecular diversity within the group reveals that the population in the ‘Top End’ of the Northern Territory is...
Authors
K. P. Aplin, S. G. Rhind, J. Ten Have, R. Terry Chesser

Estimating regional landbird populations from enhanced North American Breeding Bird Surveys Estimating regional landbird populations from enhanced North American Breeding Bird Surveys

Estimating the size of bird populations is central to effective conservation planning and prudent management. I updated estimated regional bird populations for the East Gulf Coastal Plain of Mississippi using data from 275 North American Breeding Bird Surveys from 2009 to 2013. However, regional bird populations estimated from count surveys of breeding birds may be biased due to lack of...
Authors
Daniel J. Twedt

Shoal basses: A clade of cryptic identity Shoal basses: A clade of cryptic identity

Shoal basses are a cryptic clade composed of Micropterus spp. restricted to the Apalachicola River system and three southeastern Atlantic slope river drainages in the southeastern United States. This reciprocally monophyletic clade includes the Shoal Bass M. cataractae (endemic to the Apalachicola River system), the Chattahoochee Bass M. chattahoochae, and two undescribed forms from the...
Authors
Byron J. Freeman, Andrew T. Taylor, Kenneth J. Oswald, John Wares, Mary Freeman, Joseph M. Quattro, Jean Leitner

Estimating occupancy dynamics for large-scale monitoring networks: amphibian breeding occupancy across protected areas in the northeast United States Estimating occupancy dynamics for large-scale monitoring networks: amphibian breeding occupancy across protected areas in the northeast United States

Regional monitoring strategies frequently employ a nested sampling design where a finite set of study areas from throughout a region are selected within which intensive sub-sampling occurs. This sampling protocol naturally lends itself to a hierarchical analysis to account for dependence among sub-samples. Implementing such an analysis within a classic likelihood framework is...
Authors
David A.W. Miller, Evan H. Campbell Grant

Evidence of population resistance to extreme low flows in a fluvial-dependent fish species Evidence of population resistance to extreme low flows in a fluvial-dependent fish species

Extreme low streamflows are natural disturbances to aquatic populations. Species in naturally intermittent streams display adaptations that enhance persistence during extreme events; however, the fate of populations in perennial streams during unprecedented low-flow periods is not well-understood. Biota requiring swift-flowing habitats may be especially vulnerable to flow reductions. We...
Authors
Rachel A. Katz, Mary Freeman

Simulating range-wide population and breeding habitat dynamics for an endangered woodland warbler in the face of uncertainty Simulating range-wide population and breeding habitat dynamics for an endangered woodland warbler in the face of uncertainty

Population viability analyses provide a quantitative approach that seeks to predict the possible future status of a species of interest under different scenarios and, therefore, can be important components of large-scale species’ conservation programs. We created a model and simulated range-wide population and breeding habitat dynamics for an endangered woodland warbler, the golden...
Authors
Adam Duarte, Jeffrey Hatfield, Todd M. Swannack, Michael R. J. Forstner, M. Clay Green, Floyd W. Weckerly

A method for estimating abundance of mobile populations using telemetry and counts of unmarked animals A method for estimating abundance of mobile populations using telemetry and counts of unmarked animals

While numerous methods exist for estimating abundance when detection is imperfect, these methods may not be appropriate due to logistical difficulties or unrealistic assumptions. In particular, if highly mobile taxa are frequently absent from survey locations, methods that estimate a probability of detection conditional on presence will generate biased abundance estimates. Here, we...
Authors
Matthew Clement, Joy M O’Keefe, Brianne Walters

Discovering loose group movement patterns from animal trajectories Discovering loose group movement patterns from animal trajectories

The technical advances of positioning technologies enable us to track animal movements at finer spatial and temporal scales, and further help to discover a variety of complex interactive relationships. In this paper, considering the loose gathering characteristics of the real-life groups' members during the movements, we propose two kinds of loose group movement patterns and...
Authors
Yuwei Wang, Ze Luo, Yan Xiong, Diann J. Prosser, Scott H. Newman, John Y. Takekawa, Baoping Yan
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