Analysis of Grass Carp eDNA Data
March 16, 2023
This product contains code to analyze a dataset that was collected to compare a LAMP assay and a qPCR assay for Grass Carp in a pond study. This repository contains the RMarkdown and R files used to analyze the data. It was created to allow for reproducible results. The code assumes the user is experience with R, especially the Tidyverse, and Stan.
Citation Information
| Publication Year | 2023 |
|---|---|
| Title | Analysis of Grass Carp eDNA Data |
| DOI | 10.5066/P9NICB9V |
| Authors | Stacie A Kageyama, Richard A Erickson |
| Product Type | Data Release |
| Record Source | USGS Asset Identifier Service (AIS) |
| USGS Organization | Upper Midwest Environmental Sciences Center |
Related
Validation of a portable eDNA detection kit for invasive carps Validation of a portable eDNA detection kit for invasive carps
Loop-mediated isothermal amplification (LAMP) is a rapid molecular detection technique that has been used as a diagnostic tool for detecting human and animal pathogens for over 20 years and is promising for detecting environmental DNA shed by invasive species. We designed a LAMP assay to detect the invasive carps, silver carp (Hypophthalmichthys molitrix), bighead carp...
Authors
Stacie Kageyama, Matthew Hoogland, Tariq Tajjioui, Theresa Schreier, Richard Erickson, Christopher Merkes
Related
Validation of a portable eDNA detection kit for invasive carps Validation of a portable eDNA detection kit for invasive carps
Loop-mediated isothermal amplification (LAMP) is a rapid molecular detection technique that has been used as a diagnostic tool for detecting human and animal pathogens for over 20 years and is promising for detecting environmental DNA shed by invasive species. We designed a LAMP assay to detect the invasive carps, silver carp (Hypophthalmichthys molitrix), bighead carp...
Authors
Stacie Kageyama, Matthew Hoogland, Tariq Tajjioui, Theresa Schreier, Richard Erickson, Christopher Merkes