Data relating to the development of a quantitative PCR assay for detecting Northwest salamander (Ambystoma gracile) in environmental DNA samples
July 17, 2023
The data support a study that describes the development and validation of a primer and probe based quantitative PCR (qPCR) assay for use with environmental DNA to detect Northwest salamander (Ambystoma gracile), a species endemic to the temperate Pacific coastal region of North America. The metadata includes qPCR quantification cycle (Cq) values from testing the A. gracile assay on DNA extracted from tissue samples derived from several A. gracile and closely related species and Cq values from testing the assay on environmental DNA (eDNA ) samples collected from two lakes, one containing A. gracile and one without the species.
Citation Information
Publication Year | 2023 |
---|---|
Title | Data relating to the development of a quantitative PCR assay for detecting Northwest salamander (Ambystoma gracile) in environmental DNA samples |
DOI | 10.5066/P9MAE0LU |
Authors | Marshal S Hoy, Carl O Ostberg |
Product Type | Data Release |
Record Source | USGS Asset Identifier Service (AIS) |
USGS Organization | Western Fisheries Research Center (WFRC) |
Rights | This work is marked with CC0 1.0 Universal |
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Development of a quantitative PCR assay for detecting northwest salamander (ambystoma gracile) in environmental DNA samples
We developed a primer and probe based quantitative PCR assay for use with environmental DNA to detect Northwest salamander (Ambystoma gracile), a species endemic to the temperate Pacific coastal region of North America. The assay targets a region in the mitochondrial DNA (mtDNA) D-loop gene. Tests of the assay were performed in silico (using the NCBI BLAST tool), in vitro (using DNA extracted from
Authors
Marshal Hoy, Carl Ostberg
Marshal S Hoy
Biological Science Technician
Biological Science Technician
Email
Phone
Ext
2069
Carl Ostberg, Ph.D.
Research Fish Biologist
Research Fish Biologist
Email
Phone
Related
Development of a quantitative PCR assay for detecting northwest salamander (ambystoma gracile) in environmental DNA samples
We developed a primer and probe based quantitative PCR assay for use with environmental DNA to detect Northwest salamander (Ambystoma gracile), a species endemic to the temperate Pacific coastal region of North America. The assay targets a region in the mitochondrial DNA (mtDNA) D-loop gene. Tests of the assay were performed in silico (using the NCBI BLAST tool), in vitro (using DNA extracted from
Authors
Marshal Hoy, Carl Ostberg
Marshal S Hoy
Biological Science Technician
Biological Science Technician
Email
Phone
Ext
2069
Carl Ostberg, Ph.D.
Research Fish Biologist
Research Fish Biologist
Email
Phone