Neosho Madtom (Noturus placidus) short read archive and whole genome sequence data
March 8, 2022
Whole genome sequence data from ten Neosho madtom originating from three geographically separated populations. A Neosho madtom genome was de novo assembled and genome size and content were assessed. Genomic DNA was used to construct one small insert paired-end library per fish with an approximate insert size of 300 bp. The library was constructed following the manufacturer's protocol with reagents supplied in Illumina's TruSeq DNA PCR-Free sample preparation kit (FC-121-3001).
Citation Information
| Publication Year | 2022 |
|---|---|
| Title | Neosho Madtom (Noturus placidus) short read archive and whole genome sequence data |
| DOI | 10.5066/P9MAPT9T |
| Authors | Lynsey K. Whitaker, Mark L Wildhaber, Gary S Johnson, Robert D. Schnabel, Tendai Mhlanga-Mutangadura, Vernon M. Tabor, Daniel Fenner, Jared E. Decker |
| Product Type | Data Release |
| Record Source | USGS Asset Identifier Service (AIS) |
| USGS Organization | Columbia Environmental Research Center |
| Rights | This work is marked with CC0 1.0 Universal |
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Exploring genetic variation and population structure in a threatened species, Noturus placidus, with whole-genome sequence data
The Neosho madtom (Noturus placidus) is a small catfish, generally less than 3 inches in length, unique to the Neosho-Spring River system within the Arkansas River Basin. It was federally listed as threatened in 1990, largely due to habitat loss. For conservation efforts, we generated whole-genome sequence data from 10 Neosho madtom individuals originating from 3 geographically separated populatio
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