Software

Digital Shoreline Analysis System version 5.0

Bioinformatics software repository containing python scripts intended for search and download of genetic information obtained from GenBank NCBI genetics data resources in support of developing PCR primers, targeted genetic databases, genetic analyses, and data interpretation. Includes multiple functions to streamline this process.

This software release provides the database application that runs the Massachusetts Sustainable-Yield Estimator (MA SYE) computer program (version 2.0). The MA SYE was developed by the U.S. Geological Survey, in cooperation with the Massachusetts Department of Environmental Protection, to provide a planning-level decision-support tool designed to help decision makers estimate daily mean...

This software release provides the database application that runs the Connecticut Streamflow and Sustainable Water Use Estimator (CT SSWUE) computer program (version 1.0). The CT SSWUE was developed by the U.S. Geological Survey, in cooperation with the Connecticut Department of Energy and Environmental Protection, to provide a planning-level decision-support tool designed to help...

The Surrogate Analysis and Index Developer (SAID) tool is a stand-alone tool to assist in the creation of ordinary least squares (OLS) regression models by providing visual and quantitative diagnostics to the user.

GenEst, a generalized estimator of wildlife mortality at renewable energy facilities.

neic-glass3 is an open source and platform independent seismic event detection and association algorithm developed by the United States Geological Survey (USGS) National Earthquake Information Center (NEIC) and Caryl Erin Johnson, PhD, Introspective Systems LLC. This algorithm converts a time series of seismic phase arrival times, back azimuth estimates from array beams, and cross...

GenEst is a tool for estimating mortalities from efficiency, persistence, and carcass data.

R code to fit models with and without sample weights and simulation code

R package developed to support study design for acoustic bat surveys with imperfect detection misidentification

The data set is six separate csv files. Four of which contain the quantity of DNA copy numbers and fluor used to analyze the DNA quantities collected from water samples from four separate portions of the study (adult SL field, adult SL lab, larval SL field, larval SL lab) and need to be in their own csv file. Also included is a csv with adult SL trapping data, a csv for larval SL...

These scripts prepare input files and run a Generalized Random Tessellation Stratified (GRTS) draw to select sampling locations for the Integrated Monarch Monitoring Program in the U.S., Canada, and Mexico.