Software

The Spatio Temporal Asset Catalog (STAC) family of specifications standardizes the way geospatial metadata is structured to better enable data querying. The United States Geological Survey (USGS) utilizes STAC to better enable the search and discovery of Landsat data by providing STAC metadata for every Landsat data product accessible through the Amazon Web Services (AWS) cloud platform...

geofetch is an R package that provides an interface for interacting with online rasters. By making use of drivers from the Geospatial Data Abstraction Library (GDAL) for accessing online rasters, it facilitates efficient raster operations by only retrieving data that falls in the user-specified area of interest. The package is built so that adding interfaces to new datasets is simple...

This repository contains code to run an occupancy model for eDNA data from a gradient along the Illinois River collected in 2015.

We provide R Markdown files that are built by Bookdown to create a tutorial (HTML) that contains step-by-step examples on how to use trigonometric and cyclic cubic spline hierarchical models to analyze animal diel activity patterns from time-stamped data.

Separates a subduction zone earthquake catalog into three tectonic regions: upper plate, interface, and lower plate

FishScale estimates fish lengths, numeric abundance, and biomass density in underwater still images. This software package is further described in a journal article by Esselman et al. (in revision; Methods in Ecology and Evolution) entitled "A transferable approach for quantifying benthic fish sizes and densities in annotated underwater images". FishScale uses binary masks obtained from...