Software
An official USGS software project is code reviewed and approved at the bureau-level for distribution.
Filter Total Items: 921
wren: water-quality regression tools wren: water-quality regression tools
An R shiny application to organize and streamline the process of regression model development using time series data. An interactive browser interface allows users to evaluate potential variables, compare models, and output summary documents compiling descriptive graphs and statistics for archival purposes. The application allows for the processing of left-censored response variables...
ocelote 1.1.0 ocelote 1.1.0
This release adds functionality for building debris-flow likelihood lookup tables, and uploading the results to the National Weather Service (NWS) FTP endpoint. The release: * Adds the `authenticate nws` command, which collects authentication credentials for uploading to the NWS FTP endpoint * Updates the `run` command to compute debris-flow likelihood lookup tables, and save the results...
Code for Projected Canadian Forest Fire Danger Rating System (CFFDRS) metrics within Fire Danger Rating Areas in Alaska (1980–2099) (version 1.0.0) Code for Projected Canadian Forest Fire Danger Rating System (CFFDRS) metrics within Fire Danger Rating Areas in Alaska (1980–2099) (version 1.0.0)
Effective future fire planning and decision-making in Alaska requires accessible, interpretable, and locally relevant climate data to anticipate fire danger. To meet this need, we utilized an existing dataset of projected fire danger metrics from the Canadian Forest Fire Danger Rating System (Young et al. 2025). This dataset contains daily projections from 1980 through 2099 for key...
Integrating hunter dynamics and waterfowl dynamics to inform harvest management: Software release Integrating hunter dynamics and waterfowl dynamics to inform harvest management: Software release
R code and Stan models to simulate sample data set, perform parameter estimation, project future scenarios, and produce plots for accompanying publication examining the integrated dynamics of waterfowl and hunter populations through harvest.
telem_assembly: harmonizing wildlife telemetry data (version 1.0.0) telem_assembly: harmonizing wildlife telemetry data (version 1.0.0)
This software was developed using the statistical program R (R Core Team 2024) to compile multiple wildlife tracking datasets that contain locations of animals recorded through time. The software is organized through a series of scripts that run hierarchically through script sourcing. To demonstrate how the software works, we simulated four wildlife tracking datasets, each representing...
Spiked qPCR primary analysis Spiked qPCR primary analysis
This script is for analyzing raw eDNA qPCR data. It is designed to efficiently concatenate qPCR data from multiple plates exported as *.csv files. It will assist with completing several QA/QC checks and output documentation of these checks as well as helpful files for further review.