Software

The MODFLOW One-Water Hydrologic Flow Model (MF-OWHM) is an integrated hydrologic model designed for the analysis of conjunctive-use management.

HU12 NHDPlusV2 NHDPlus HiRes Matching The logic encoded in this repository is documented in: Blodgett, D., Johnson, J. M., Sondheim, M., Wieczorek, M., Frazier, N. (2021). Mainstems: A logical data model implementing mainstem and drainage basin feature types based on WaterML2 Part 3: HY Features concepts. Environmental Modelling and Software, 135. https://doi.org/10.1016/j.envsoft.2020...

This software release contains one R script file that allows the user to download data and reproduce all of the figures and analyses associated with DiRenzo et al. In the R script, we provide a guide to understanding and validating complex models using data simulations. In an effort to facilitate the implementation of these methods, we provide a running example throughout DiRenzo et al...

We developed a method to construct hierarchically nested and biologically relevant groupings of similar habitats associated with field surveys while considering structure/connectedness (movements between habitats). This approach can support mobile species using high fidelity sites where monitoring during surveys occurs, such as birthing grounds, breeding grounds, or stopovers/seasonal...

The distance within which populations respond to features in a landscape (scale of effect) can indicate how disturbance and management may affect wildlife. Using annual counts of male greater sage-grouse (Centrocercus urophasianus) attending 584 leks in southwest Wyoming (2003-2019) and estimates of sagebrush (Artemisia spp.) cover from a remote sensing product (Rigge et al., 2021...

This version of ModelMuse fixes a serious bug in ModelMuse version 5.1.

The ReplicateChar package in R language provides functions for visualization and analysis of replicated charcoal counts within a discreet sedimentary horizon. The package consists of 1000+ lines of code and requires Windows OS for full functionality. It also integrates and automates the CharAnalysis.exe software (Higuera et.al) and allows for more efficient run times of high volumes of...

ModelMuse version 5.1 updates version 5.0 by adding support for the groundwater transport process and time series files in MODFLOW 6.

A Google Earth Engine (GEE) application was developed to explore the spatial distribution map of potential percent change (2020 compared to 1985) of design peak-flow, an average percent change (average of pixels within the selected urban area) as text, and three time-series (1985-2020) charts of design peak-flow for three precipitation frequencies (with three recurrence interval and...

The software consists of three scripts to be run in the R statistical program: 1) Alligator growth simulation; 2) alligator integrated population model file; and 3) data visualization script. Script #1 produces growth transition probabilities that are used in script #2. The second script uses the outputs from #1 as well as other data files to run an integrated population model. The last...

This is code for an integrated population model developed to understand the effect of horseshoe crab abundance on population demographics of red knot, an Arctic-breeding shorebird. This model was developed as part of the revision to the Atlantic States Marine Fisheries Commission Adaptive Resource Management Plan for horseshoe crabs.

Approximate Dynamic Programming relies on forward simulation of the system, so two population projection models are used, one for crabs and one for red knots. The two models are linked: HSC abundance is a predictor variable in the REKN model. Other useful outputs are produced as well, such as predictions of future harvest.