Publications
Browse publications authored by our scientists. Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.
**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.
Filter Total Items: 5124
Remote ecological monitoring with smartphones and tasker Remote ecological monitoring with smartphones and tasker
Researchers have increasingly used autonomous monitoring units to record animal sounds, track phenology with timed photographs, and snap images when triggered by motion. We piloted the use of smartphones to monitor wildlife in the Riverside East Solar Energy Zone (California) and at Indiana Dunes National Park (Indiana). For both efforts, we established remote autonomous monitoring...
Authors
Therese M. Donovan, Cathleen Balantic, Jonathan Katz, Mark Massar, Randy Knutson, Kara Duh, Peter Jones, Keith Epstein, Julien Lacasse-Roger, João Dias
Hibernation behavior of a federally-threatened ground squirrel: Climate change and habitat selection implications Hibernation behavior of a federally-threatened ground squirrel: Climate change and habitat selection implications
Hibernation is an adaptation to survive periods of stress, from food limitation or harsh thermal conditions. A key question in contemporary ecology is whether rare, range-restricted species can change their behavior in response to climate change (i.e., through behavioral plasticity). The northern Idaho ground squirrel, Urocitellus brunneus (A. H. Howell, 1928), is a federally threatened...
Authors
Amanda R. Goldberg, Courtney J. Conway
Gonad size measured by ultrasound to assign stage of maturity in Burbot Gonad size measured by ultrasound to assign stage of maturity in Burbot
We measured gonad size (diameter and circumference) by ultrasound and used it as a metric to assign stage of maturity in Burbot Lota lota from Lake Roosevelt, Washington. We collected paired gonad tissue and ultrasound measurements monthly from November 2017 to March 2018 and processed gonad tissue for histological analysis to confirm stage of maturity. We measured gonad diameter and...
Authors
Lauren M. McGarvey, Jason E. Ilgen, Molly A. H. Webb, Christopher S. Guy, Jason G. McLellan
Evidence for the use of mucus swabs to detect Renibacterium salmoninarum in brook trout Evidence for the use of mucus swabs to detect Renibacterium salmoninarum in brook trout
Efforts to advance fish health diagnostics have been highlighted in many studies to improve the detection of pathogens in aquaculture facilities and wild fish populations. Typically, the detection of a pathogen has required sacrificing fish; however, many hatcheries have valuable and sometimes irreplaceable broodstocks, and lethal sampling is undesirable. Therefore, the development of...
Authors
Tawni B. Riepe, Victoria Vincent, Vicki Milano, Eric R. Fetherman, Dana L. Winkelman
Acoustic tag retention and tagging mortality of juvenile cisco Coregonus artedi Acoustic tag retention and tagging mortality of juvenile cisco Coregonus artedi
Release of hatchery-reared juvenile cisco (Coregonus artedi) is an important tool for recovering Great Lakes populations, but post-release survival is unknown. Telemetry using small acoustic tags provides opportunities to assess the efficacy of hatchery-reared fish releases. However, better understanding of the tolerance of juvenile cisco to acoustic tags is needed. Juvenile cisco...
Authors
James E. McKenna, Suresh Sethi, Grant Marvin Scholten, Jeremy W. Kraus, Marc Chalupnicki
The American Kestrel (Falco sparverius) genoscape: Implications for monitoring, management, and subspecies boundaries The American Kestrel (Falco sparverius) genoscape: Implications for monitoring, management, and subspecies boundaries
Identifying population genetic structure is useful for inferring evolutionary process and comparing the resulting structure with subspecies boundaries can aid in species management. The American Kestrel (Falco sparverius) is a widespread and highly diverse species with 17 total subspecies, only 2 of which are found north of U.S./Mexico border (F. s. paulus is restricted to southeastern...
Authors
K. C. Ruegg, M. Brinkmeyer, C. M. Bossu, R. Bay, E. C. Anderson, Clint W. Boal, R. D. Dawson, A. Eschenbauch, C. J. W. McClure, K. E. Miller, L. Morrow, J. R. Morrow, M. D. Oleyar, B. Ralph, S. Schulwitz, T. Swem, J. F. Therrien, Rich Van Buskirk, T. B. Smith, J. A. Heath
Dynamic Energy Budget modelling to predict eastern oyster growth, reproduction, and mortality under river management and climate change scenarios Dynamic Energy Budget modelling to predict eastern oyster growth, reproduction, and mortality under river management and climate change scenarios
Eastern oysters growing in deltaic Louisiana estuaries in the northern Gulf of Mexico must tolerate considerable salinity variation from natural climate variability (e.g., rainfall and stream run-off pushing isohalines offshore; tropical storms pushing isohalines inshore) and man-made diversions and siphons releasing freshwater from the Mississippi River. These salinity variations are...
Authors
Romain Lavaud, Megan La Peyre, Justic Dubravko, Jerome F. La Peyre
Climate change may cause shifts in growth and instantaneous natural mortality of American Shad throughout their native range Climate change may cause shifts in growth and instantaneous natural mortality of American Shad throughout their native range
American Shad Alosa sapidissima is an anadromous species with populations ranging along the U.S. Atlantic coast. Past American Shad stock assessments have been data limited and estimating system-specific growth parameters or instantaneous natural mortality (M) was not possible. This precluded system-specific stock assessment and management due to reliance on these parameters for...
Authors
Erin K. Gilligan, Daniel S. Stich, Katherine E. Mills, Michael M. Bailey, Joseph D. Zydlewski
Roadside rights-of-way as pollinator habitat: A literature review Roadside rights-of-way as pollinator habitat: A literature review
Pollination of crops and naturally-occurring flowering plants is a critical ecosystem service provided by managed and unmanaged animal pollinators. Insects are the most studied pollinators, particularly managed honey bees, unmanaged wild bees, and butterflies. Bees and butterflies thrive in early-successional habitat featuring grasses, exposed soil, wildflowers, and shrubs, which is...
Authors
Brianne Du Clos, Phillip deMaynadier, Frank Drummond, Cyndy Loftin
PumaPlex100: An expanded tool for puma SNP genotyping with low-yield DNA PumaPlex100: An expanded tool for puma SNP genotyping with low-yield DNA
The original PumaPlex is a high-throughput assay developed to genotype 25 single nucleotide polymorphisms (SNPs) in pumas (Puma concolor). Here, we describe the development of PumaPlex100 – an expanded version of the original assay that now genotypes > 100 SNPs. We tested 142 candidate SNPs and developed a panel of 101 polymorphic loci, which are spread across four multiplexes and...
Authors
John A. Erwin, Robert R. Fitak, Melanie Culver
Embracing ensemble species distribution models to inform at-risk species status assessments Embracing ensemble species distribution models to inform at-risk species status assessments
Conservation planning depends on reliable information regarding the geographic distribution of species. However, our knowledge of species' distributions is often incomplete, especially when species are cryptic, difficult to survey, or rare. The use of species distribution models has increased in recent years and proven a valuable tool to evaluate habitat suitability for species. However
Authors
C. Ramirez-Reyes, M. Nazeri, Garrett Street, D. T. Jones-Ferrand, Francisco Vilella, K. O. Evans
An integrated population model for harvest management of Atlantic brant An integrated population model for harvest management of Atlantic brant
Atlantic brant (Branta bernicla hrota) are important game birds in the Atlantic Flyway and several long-term monitoring data sets could assist with harvest management, including a count-based survey and demographic data. Considering their relative strengths and weaknesses, integrated analysis to these data would likely improve harvest management, but tools for integration have not yet...
Authors
A.J. Roberts, J.L. Dooly, Beth Ross, T.C. Nichols, J.O. Leafloor, K.W. Dufour