Publications
Browse publications authored by our scientists. Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.
**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.
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A multifaceted reconstruction of the population structure and life history expressions of a remnant metapopulation of Bonneville Cutthroat Trout: Implications for maintaining intermittent connectivity A multifaceted reconstruction of the population structure and life history expressions of a remnant metapopulation of Bonneville Cutthroat Trout: Implications for maintaining intermittent connectivity
Fishes that evolutionarily demonstrated a fluvial life history expression and migrated to spawning and rearing habitat by using lotic corridors are increasingly impacted by fragmentation. The overall goal of this study was to identify the contemporary importance of main-stem connectivity and tributaries for maintaining life history expression, population structure, and viability of a...
Authors
Phaedra E. Budy, Paul D. Thompson, Matt D. McKell, Gary P. Thiede, Timothy E. Walsworth, Mary M. Conner
Genetic structure of Smallmouth Bass in the Lake Michigan and Upper Mississippi River drainages relates to habitat, distance, and drainage boundaries: Smallmouth bass population genetic structure Genetic structure of Smallmouth Bass in the Lake Michigan and Upper Mississippi River drainages relates to habitat, distance, and drainage boundaries: Smallmouth bass population genetic structure
Analysis of genetic connectivity helps to define stock boundaries and provides information on interpopulation dynamics, such as migration and spawning site fidelity. We used 16 microsatellite loci to describe the genetic population structure of 1,215 Smallmouth Bass Micropterus dolomieu from 32 sites throughout the upper Mississippi River and Lake Michigan watersheds. We found that...
Authors
Peter T. Euclide, Jenna Ruzich, Scott P. Hansen, David Rowe, Troy G. Zorn, Wesley Larson
The abundance of Greater Sage-Grouse as a proxy for the abundance of sagebrush-associated songbirds in Wyoming, USA The abundance of Greater Sage-Grouse as a proxy for the abundance of sagebrush-associated songbirds in Wyoming, USA
Surrogate-species concepts are prevalent in animal conservation. Such strategies advocate for conservation by proxy, wherein one species is used to represent other taxa to obtain a conservation objective. The efficacy of such approaches has been rarely assessed empirically, but is predicated on concordance between the surrogate and sympatric taxa in distribution, abundance, and...
Authors
Jason D. Carlisle, Anna D. Chalfoun
Diet of a rare herbivore based on DNA metabarcoding of feces: Selection, seasonality, and survival Diet of a rare herbivore based on DNA metabarcoding of feces: Selection, seasonality, and survival
In herbivores, survival and reproduction are influenced by quality and quantity of forage, and hence, diet and foraging behavior are the foundation of an herbivore's life history strategy. Given the importance of diet to most herbivores, it is imperative that we know the species of plants they prefer, especially for herbivorous species that are at risk for extinction. However, it is...
Authors
Amanda R. Goldberg, Courtney J. Conway, David C. Tank, Kimberly R. Andrews, Digpal S. Gour, Lisette P. Waits
Environmental and social factors influencing wolf (Canis lupus) howling behavior Environmental and social factors influencing wolf (Canis lupus) howling behavior
Animals communicate in a variety of ways and calls are used for a number of important behaviors. Temperature, wind, time of day, and human activities can affect animals’ use of calls, particularly over long distances. Effects of group size on the use of calls can be particularly influential in territorial social carnivores. Where gray wolves (Canis lupus) are hunted by humans, for...
Authors
David Edward Ausband, Sarah B. Bassing, Michael S. Mitchell
Balancing fish-energy-cost tradeoffs through strategic basin-wide dam management Balancing fish-energy-cost tradeoffs through strategic basin-wide dam management
Dam management often involves tradeoffs among hydropower generation capacity, environmental impacts, and project costs. However, our understandings of such tradeoffs under a full range of dam management options remain limited, which hinders our ability to make sound and scientifically defensible dam management decisions. In order to assess the scope for theoretical tradeoffs, a dynamic...
Authors
Cuihong Song, Andrew O’Malley, Joseph D. Zydlewski, Weiwei Mo
The influence of hunting pressure and ecological factors on fecal glucocorticoid metabolites in wild elk The influence of hunting pressure and ecological factors on fecal glucocorticoid metabolites in wild elk
Climate change and human population growth have increased anthropogenic threats to biodiversity and habitat fragmentation. Ecologists and conservationists need tools to assess the effect of these ecological and environmental perturbations on organismal fitness. One possibility is glucocorticoids (e.g., cortisol and corticosterone) which integrate various factors such as anthropogenic...
Authors
David C. Ensminger, Catharine Pritchard, Tracy Langkilde, Tess Gingery, Jeremiah E. Banfield, W. David Walter
Habitat associations and distributions of two endemic crayfishes, Cambarus (Erebicambarus) maculatus Hobbs & Pflieger, 1988 and Faxonius (Billecambarus) harrisonii (Faxon, 1884) (Decapoda: Astacoidea: Cambaridae), in the Meramec River drainage, Missouri, Habitat associations and distributions of two endemic crayfishes, Cambarus (Erebicambarus) maculatus Hobbs & Pflieger, 1988 and Faxonius (Billecambarus) harrisonii (Faxon, 1884) (Decapoda: Astacoidea: Cambaridae), in the Meramec River drainage, Missouri,
Understanding the habitat associations and distributions of rare species is important to inform management and policy decisions. Cambarus (Erebicambarus) maculatus Hobbs & Pflieger, 1988, the freckled crayfish, and Faxonius (Billecambarus) harrisonii (Faxon, 1884), the belted crayfish, are two of Missouri’s endemic crayfish species. Both species are listed as Vulnerable (S3) on Missouri...
Authors
J. Chilton, Amanda E. Rosenberger, Robert J. DiStefano
Using reproductive potential to assess oyster population sustainability Using reproductive potential to assess oyster population sustainability
Ensuring that oysters remain sustainable in the face of significant coastal restoration activities, high local subsidence rates, and predicted sea-level rise requires a deeper understanding of basic population demographics, including reproductive potential. We quantified fecundity (eggs ind−1) of oysters at high- and low-salinity sites during a fall and spring spawn season. We assessed...
Authors
Danielle A. Marshall, Samuel C. Moore, Malinda Sutor, Jerome F. La Peyre, Megan La Peyre
Estimating the drivers of species distributions with opportunistic data using mediation analysis Estimating the drivers of species distributions with opportunistic data using mediation analysis
Ecological occupancy modeling has historically relied on high-quality, low-quantity designed-survey data for estimation and prediction. In recent years, there has been a large increase in the amount of high-quantity, unknown-quality opportunistic data. This has motivated research on how best to combine these two data sources in order to optimize inference. Existing methods can be...
Authors
D. B. Huberman, B. J. Reich, Krishna Pacifici, Jaime A. Collazo
Keeping it classy: Classification of live fish and ghost PIT tags detected with a mobile PIT tag interrogation system using an innovative analytical approach Keeping it classy: Classification of live fish and ghost PIT tags detected with a mobile PIT tag interrogation system using an innovative analytical approach
The ability of passive integrated transponder (PIT) tag data to improve demographic parameter estimates has led to the rapid advancement of PIT tag systems. However, ghost tags create uncertainty about detected tag status (i.e., live fish or ghost tag) when using mobile interrogation systems. We developed a method to differentiate between live fish and ghost tags using a random forest
Authors
J. Benjamin Stout, Mary Conner, Phaedra E. Budy, Peter Mackinnon, Mark McKinstry
Using a bayesian multistate occupancy model to assess seabird and shorebird status in Glacier Bay, Alaska Using a bayesian multistate occupancy model to assess seabird and shorebird status in Glacier Bay, Alaska
The U.S. Department of Interior National Park Service is charged with both monitoring avian communities and evaluating the influence of visitors to National Parks on sensitive species; however, this task is challenging considering that sampling programs often involve multiple species, each with differing behavior, habitat requirements, and detectability. Our objectives were to build a...
Authors
Steven L. Whitlock, Tania Lewis, James T. Peterson