Publications
Browse publications authored by our scientists. Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.
**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.
Filter Total Items: 5110
Estimating occupancy and abundance using aerial images with imperfect detection Estimating occupancy and abundance using aerial images with imperfect detection
Species distribution and abundance are critical population characteristics for efficient management, conservation, and ecological insight. Point process models are a powerful tool for modelling distribution and abundance, and can incorporate many data types, including count data, presence-absence data, and presence-only data. Aerial photographic images are a natural tool for collecting...
Authors
Perry J. Williams, Mevin Hooten, Jamie N. Womble, Michael R. Bower
Recruitment phenology and pelagic larval duration in Caribbean amphidromous fishes Recruitment phenology and pelagic larval duration in Caribbean amphidromous fishes
Amphidromous fishes are major components of oceanic tropical island stream ecosystems, such as those of the Caribbean island, Puerto Rico. Fishes with this life history face threats related to the requirement for connectivity between freshwater and marine environments during early life stages. Pelagic larval duration and recruitment phenology are 2 early life-history processes that are...
Authors
Augustin C. Engman, Thomas J. Kwak, Jesse R. Fischer
Integrating the effects of salinity on the physiology of the eastern oyster, Crassostrea virginica, in the northern Gulf of Mexico through a Dynamic Energy Budget model Integrating the effects of salinity on the physiology of the eastern oyster, Crassostrea virginica, in the northern Gulf of Mexico through a Dynamic Energy Budget model
We present a Dynamic Energy Budget (DEB) model for the eastern oyster, Crassostrea virginica, which enables the inclusion of salinity as a third environmental variable, on top of the standard foodr and temperature variables. Salinity changes have various effects on the physiology of oysters, potentially altering filtration and respiration rates, and ultimately impacting growth...
Authors
Romain Lavaud, Megan K. LaPeyre, Sandra M. Casas, C. Bacher, Jerome F. La Peyre
Responses of terrestrial herpetofauna to persistent, novel ecosystems resulting from mountaintop removal mining Responses of terrestrial herpetofauna to persistent, novel ecosystems resulting from mountaintop removal mining
Mountaintop removal mining is a large-scale surface mining technique that removes entire floral and faunal communities, along with soil horizons located above coal seams. In West Virginia, the majority of this mining occurs on forested mountaintops. However, after mining ceases the land is typically reclaimed to grasslands and shrublands, resulting in novel ecosystems. In this study, we...
Authors
Jennifer M. Williams, Donald J. Brown, Petra B. Wood
Bipartite networks improve understanding of effects of waterbody size and angling method on angler–fish interactions Bipartite networks improve understanding of effects of waterbody size and angling method on angler–fish interactions
Networks used to study interactions could provide insights to fisheries. We compiled data from 27 297 interviews of anglers across waterbodies that ranged in size from 1 to 12 113 ha. Catch rates of fish species among anglers grouped by species targeted generally differed between angling methods (bank or boat). We constructed angler–catch bipartite networks (angling method specific)...
Authors
Christopher J. Chizinski, Dustin R. Martin, Daizaburo Shizuka, Kevin L. Pope
Fuel-reduction management alters plant composition, carbon and nitrogen pools, and soil thaw in Alaskan boreal forest Fuel-reduction management alters plant composition, carbon and nitrogen pools, and soil thaw in Alaskan boreal forest
Increasing wildfire activity in Alaska's boreal forests has led to greater fuel-reduction management. Management has been implemented to reduce wildfire spread, but the ecological impacts of these practices are poorly known. We quantified the effects of hand-thinning and shearblading on above- and belowground stand characteristics, plant species composition, carbon (C) and nitrogen (N)...
Authors
April M. Melvin, Gerardo Celis, Jill F. Johnstone, A. David McGuire, Helene Genet, Edward A.G. Schuur, T. Scott Rupp, Michelle C. Mack
Free-ranging domestic cats (Felis catus) on public lands: estimating density, activity, and diet in the Florida Keys Free-ranging domestic cats (Felis catus) on public lands: estimating density, activity, and diet in the Florida Keys
Feral and free-ranging domestic cats (Felis catus) can have strong negative effects on small mammals and birds, particularly in island ecosystems. We deployed camera traps to study free-ranging cats in national wildlife refuges and state parks on Big Pine Key and Key Largo in the Florida Keys, USA, and used spatial capture–recapture models to estimate cat abundance, movement, and...
Authors
Michael V. Cove, Beth Gardner, Theodore R. Simons, Roland Kays, Allan F. O’Connell
Apparent annual survival estimates of tropical songbirds better reflect life history variation when based on intensive field methods Apparent annual survival estimates of tropical songbirds better reflect life history variation when based on intensive field methods
Aim Adult survival is central to theories explaining latitudinal gradients in life history strategies. Life history theory predicts higher adult survival in tropical than north temperate regions given lower fecundity and parental effort. Early studies were consistent with this prediction, but standard-effort netting studies in recent decades suggested that apparent survival rates in...
Authors
Thomas E. Martin, Margaret M. Riordan, Rimi Repin, James C. Mouton, William M. Blake
Evaluating trade-offs in bull trout reintroduction strategies using structured decision making Evaluating trade-offs in bull trout reintroduction strategies using structured decision making
Structured decision making allows reintroduction decisions to be made despite uncertainty by linking reintroduction goals with alternative management actions through predictive models of ecological processes. We developed a decision model to evaluate the trade-offs between six bull trout (Salvelinus confluentus) reintroduction decisions with the goal of maximizing the number of adults in...
Authors
William R. Brignon, James T. Peterson, Jason B. Dunham, Howard A. Schaller, Carl B. Schreck
State-dependent behavior alters endocrine–energy relationship: Implications for conservation and management State-dependent behavior alters endocrine–energy relationship: Implications for conservation and management
Glucocorticoids (GC) and triiodothyronine (T3) are two endocrine markers commonly used to quantify resource limitation, yet the relationships between these markers and the energetic state of animals has been studied primarily in small-bodied species in captivity. Free-ranging animals, however, adjust energy intake in accordance with their energy reserves, a behavior known as state...
Authors
Brett R. Jesmer, Jacob R. Goheen, Kevin L. Monteith, Matthew J. Kauffman
Incorporating population viability models into species status assessment and listing decisions under the U.S. Endangered Species Act Incorporating population viability models into species status assessment and listing decisions under the U.S. Endangered Species Act
Assessment of a species' status is a key part of management decision making for endangered and threatened species under the U.S. Endangered Species Act. Predicting the future state of the species is an essential part of species status assessment, and projection models can play an important role in developing predictions. We built a stochastic simulation model that incorporated parametric...
Authors
Conor P. McGowan, Nathan Allan, Jeff Servoss, Shaula J. Hedwall, Brian Wooldridge
Trophic pathways supporting Arctic grayling in a small stream on the Arctic Coastal Plain, Alaska Trophic pathways supporting Arctic grayling in a small stream on the Arctic Coastal Plain, Alaska
Beaded streams are prominent across the Arctic Coastal Plain (ACP) of Alaska, yet prey flow and food web dynamics supporting fish inhabiting these streams are poorly understood. Arctic grayling (Thymallus arcticus) are a widely distributed upper-level consumer on the ACP and migrate into beaded streams to forage during the short 3-month open-water season. We investigated energy pathways...
Authors
Jason J. McFarland, Mark S. Wipfli, Matthew S. Whitman