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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 5011

Bayesian statistics for beginners: A step-by-step approach Bayesian statistics for beginners: A step-by-step approach

Bayesian statistics is currently undergoing something of a renaissance. At its heart is a method of statistical inference in which Bayes' theorem is used to update the probability for a hypothesis as more evidence or information becomes available. It is an approach that is ideally suited to making initial assessments based on incomplete or imperfect information; as that information is...
Authors
Therese M. Donovan, Ruth M. Mickey

Movement and mortality of Atlantic salmonkelts (Salmo salar) released into thePenobscot River, Maine Movement and mortality of Atlantic salmonkelts (Salmo salar) released into thePenobscot River, Maine

The Penobscot River is home to the last major run of Atlantic salmon (Salmo salar) in the United States. For over one century, the river has been stocked intensively. Since the late 1970s, most kelts are released to the Penobscot River estuary following spawning in a hatchery. Over that time, the proportion of the run made up of iteroparous individuals has declined to 1%. These fish may...
Authors
George A. Maynard, Lisa K. Izzo, Joseph D. Zydlewski

Distribution of contaminants in the environment and wildlife habitat use: A case study with lead and waterfowl on the Upper Texas Coast Distribution of contaminants in the environment and wildlife habitat use: A case study with lead and waterfowl on the Upper Texas Coast

The magnitude and distribution of lead contamination remain unknown in wetland systems. Anthropogenic deposition of lead may be contributing to negative population-level effects in waterfowl and other organisms that depend on dynamic wetland habitats, particularly if they are unable to detect and differentiate levels of environmental contamination by lead. Detection of lead and...
Authors
Brian Kearns, Stephen K. McDowell, Jena A. Moon, Elizabeth A. Rigby, Warren C. Conway, David A. Haukos

Linking demographic and food-web models to understand management trade-offs Linking demographic and food-web models to understand management trade-offs

Alternatives in ecosystem-based management often differ with respect to trade-offs between ecosystem values. Ecosystem or food-web models and demographic models are typically employed to evaluate alternatives, but the approaches are rarely integrated to uncover conflicts between values. We applied multi-state models to a capture-recapture dataset on common guillemots Uria aalge breeding...
Authors
Martina Kadin, Morten Frederiksen, Susa Niiranen, Sarah J. Converse

Effect of male age structure on reproduction in white-tailed deer Effect of male age structure on reproduction in white-tailed deer

Selective harvest regimes that create female-biased sex ratios can potentially lead to delayed breeding, reduced breeding synchrony, reduced productivity, and a female-biased sex ratio of offspring. These resulting changes in breeding behavior and population dynamics have potential to adversely affect population growth. In 2002, Pennsylvania implemented harvest regulation changes that...
Authors
Duane R. Diefenbach, Gary Alt, Bret D. Wallingford, Christopher S. Rosenberry, Eric S. Long

Individual behaviour and resource use of thermally stressed brook trout Salvelinus fontinalis portend the conservation potential of thermal refugia Individual behaviour and resource use of thermally stressed brook trout Salvelinus fontinalis portend the conservation potential of thermal refugia

Individual aggression and thermal refuge use were monitored in brook trout Salvelinus fontinalis in a controlled laboratory to determine how fish size and personality influence time spent in forage and thermal habitat patches during periods of thermal stress. On average, larger and more exploratory fish initiated more aggressive interactions and across all fish there was decreased...
Authors
Shannon L. White, B.C. Kline, Nathaniel Hitt, Tyler Wagner

Observations of American Shad Alosa sapidissima approaching and using a vertical slot fishway at the head-of-tide Brunswick Dam on the Androscoggin River, Maine Observations of American Shad Alosa sapidissima approaching and using a vertical slot fishway at the head-of-tide Brunswick Dam on the Androscoggin River, Maine

American Shad Alosa sapidissima have historically supported an important fishery along the Atlantic coastal waters of North America. However, the construction of dams reduced populations and restricted landings. Fishways are intended to mitigate obstacles to anadromous fish migrations, but a thorough evaluation of their efficiency is warranted. We analyzed data collected from video...
Authors
Daniel M. Weaver, Michael Brown, Joseph D. Zydlewski

Age truncation of alewife in Lake Michigan Age truncation of alewife in Lake Michigan

Empirical evidence has shown increased variability in harvest and recruitment of exploited fish populations, which can result directly from exploitation or indirectly from interactions between external drivers and the internal dynamics of age-structured populations. We investigated whether predation in a freshwater system could affect a prey fish population, in the same way fishing...
Authors
T. Vidal, Brian J. Irwin, Charles P. Madenjian, S. J. Wenger

Fish assemblages in a Mississippi reservoir mudflat with low structural complexity Fish assemblages in a Mississippi reservoir mudflat with low structural complexity

In shallow reservoirs, seasonal water drawdowns expose littoral areas and over time produce barren mudflats. When flooded, mudflats provide homogeneous substrates, turbid water, and eroding shorelines of limited ecological value. We hypothesized that in mudflats structurally complex habitats are occupied by more fish, smaller fish of a larger range in sizes, more species, and fish...
Authors
H. R. Hatcher, Leandro E. Miranda, M. E. Colvin, G. Coppola, M. A. Lashley

The dream and the reality: Meeting decision-making time frames while incorporating ecosystem and economic models into management strategy evaluation The dream and the reality: Meeting decision-making time frames while incorporating ecosystem and economic models into management strategy evaluation

Atlantic herring (Clupea harengus) in the Northwest Atlantic have been managed with interim harvest control rules (HCRs). A stakeholder-driven management strategy evaluation (MSE) was conducted that incorporated a broad range of objectives. The MSE process was completed within 1 year. Constant catch, conditional constant catch, and a biomass-based (BB) HCR with a 15% restriction on the...
Authors
J.J. Deroba, S.K. Gaichas, Min-Yang Lee, Rachael G. Feeney, D. Boelke, Brian J. Irwin

Black bears alter movements in response to anthropogenic features with time of day and season Black bears alter movements in response to anthropogenic features with time of day and season

Background With the growth and expansion of human development, large mammals will increasingly encounter humans, elevating the likelihood of human-wildlife conflicts. Understanding the behavior and movement of large mammals, particularly around human development, is important for crafting effective conservation and management plans for these species.Methods We used GPS collar data from...
Authors
Katherine A. Zeller, David Wattles, Laura Conlee, Stephen DeStefano

Status of the Topeka shiner in Iowa Status of the Topeka shiner in Iowa

The Topeka shiner Notropis topeka is native to Iowa, Kansas, Minnesota, Missouri, Nebraska, and South Dakota and has been federally listed as endangered since 1998. Our goals were to determine the present distribution and qualitative status of Topeka shiners throughout its current range in Iowa and characterize the extent of decline in relation to its historic distribution. We compared...
Authors
Clay Pierce, Nicholas T. Simpson, Alexander P. Bybel, Courtney L. Zambory, Michael J. Weber, Kevin J. Roe
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