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Fish and Aquatic Species

The USGS is the only federal science agency dedicated to providing independent research that supports the conservation and management of the nation’s fisheries. Our researchers develop and apply specialized tools such as genetic tracking, hydrologic modeling, and fish disease diagnostics to answer the most pressing questions facing federal, Tribal, state, and local resource managers.

Filter Total Items: 161

Passage Technologies for American Eels

The American eel ( Anguilla rostrata) migrates into freshwater in the juvenile (glass eel and elver) stage, feeds and grows in freshwater habitats, and migrates downstream to the ocean to spawn as an adult. Migrating eels frequently encounter barriers in river environments, primarily in the form of dams, that limit access of juveniles to upstream growth habitat, and can injure or kill adult...
Passage Technologies for American Eels

Passage Technologies for American Eels

The American eel ( Anguilla rostrata) migrates into freshwater in the juvenile (glass eel and elver) stage, feeds and grows in freshwater habitats, and migrates downstream to the ocean to spawn as an adult. Migrating eels frequently encounter barriers in river environments, primarily in the form of dams, that limit access of juveniles to upstream growth habitat, and can injure or kill adult...
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Restoring a native fish to Catoctin Mountain Park

Native species conservation is a fundamental purpose of National Parks. Catoctin Mountain Park (CATO) in Maryland supports a prized trout fishery and a healthy community of native fishes, with one exception: native Blue Ridge Sculpin ( Cottus caeruleomentum) appear to have been extirpated from Big Hunting Creek above Cunningham Falls. Infection by a fungal-like protist Dermocystidium is...
Restoring a native fish to Catoctin Mountain Park

Restoring a native fish to Catoctin Mountain Park

Native species conservation is a fundamental purpose of National Parks. Catoctin Mountain Park (CATO) in Maryland supports a prized trout fishery and a healthy community of native fishes, with one exception: native Blue Ridge Sculpin ( Cottus caeruleomentum) appear to have been extirpated from Big Hunting Creek above Cunningham Falls. Infection by a fungal-like protist Dermocystidium is...
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Exploring the potential effects of shale oil and gas development on freshwaters

Widespread shale oil and gas (unconventional oil and gas, UOG) has only recently begun and many gaps in our knowledge of its potential effects to freshwaters exist.
Exploring the potential effects of shale oil and gas development on freshwaters

Exploring the potential effects of shale oil and gas development on freshwaters

Widespread shale oil and gas (unconventional oil and gas, UOG) has only recently begun and many gaps in our knowledge of its potential effects to freshwaters exist.
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A hydrological framework to improve precision of Vital Signs metrics in the Appalachian highlands

Stream flow is a fundamental driver of ecological structure and function, but its influence on bioassessment measures is poorly understood. Although extreme flow conditions (e.g., floods and droughts) have long been known to play a central role in structuring stream communities, a mechanistic understanding of the linkages between flow variables, landscape and local physical characteristics, and...
A hydrological framework to improve precision of Vital Signs metrics in the Appalachian highlands

A hydrological framework to improve precision of Vital Signs metrics in the Appalachian highlands

Stream flow is a fundamental driver of ecological structure and function, but its influence on bioassessment measures is poorly understood. Although extreme flow conditions (e.g., floods and droughts) have long been known to play a central role in structuring stream communities, a mechanistic understanding of the linkages between flow variables, landscape and local physical characteristics, and...
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Fish locomotion and biomechanics as limiting and optimizing factors in fish passage

Swimming ability determines how well fish are able to access habitat, and is a fundamental design consideration for passing fish at dams, road crossings, etc.
Fish locomotion and biomechanics as limiting and optimizing factors in fish passage

Fish locomotion and biomechanics as limiting and optimizing factors in fish passage

Swimming ability determines how well fish are able to access habitat, and is a fundamental design consideration for passing fish at dams, road crossings, etc.
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Effects of temperature and energy use on fish passage and spawning success of American shad

American Shad are the most numerous and economically important anadromous species on the east coast of the United States. Yet in many river systems their populations have experienced declines, primarily due to the impacts of dams and habitat loss.
Effects of temperature and energy use on fish passage and spawning success of American shad

Effects of temperature and energy use on fish passage and spawning success of American shad

American Shad are the most numerous and economically important anadromous species on the east coast of the United States. Yet in many river systems their populations have experienced declines, primarily due to the impacts of dams and habitat loss.
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Deepwater Atlantic Habitats II: Continued Atlantic Research and Exploration in Deepwater Ecosystems with Focus on Coral, Canyon, and Seep Communities. Part II: Genetic Connectivity and Oceanomic Studies

This study utilizes genetics and genomics techniques to characterize biodiversity and genetic connectivity among deep-sea coral habitats and cold seeps in and near submarine canyons and will use environmental DNA techniques to characterize plankton diversity and to identify key contributors to carbon export from surface waters that sustain sensitive benthic communities. The proposed genetics and...
Deepwater Atlantic Habitats II: Continued Atlantic Research and Exploration in Deepwater Ecosystems with Focus on Coral, Canyon, and Seep Communities. Part II: Genetic Connectivity and Oceanomic Studies

Deepwater Atlantic Habitats II: Continued Atlantic Research and Exploration in Deepwater Ecosystems with Focus on Coral, Canyon, and Seep Communities. Part II: Genetic Connectivity and Oceanomic Studies

This study utilizes genetics and genomics techniques to characterize biodiversity and genetic connectivity among deep-sea coral habitats and cold seeps in and near submarine canyons and will use environmental DNA techniques to characterize plankton diversity and to identify key contributors to carbon export from surface waters that sustain sensitive benthic communities. The proposed genetics and...
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Climate change forecasts for eastern salmonids

Small streams in forests are likely to see dramatic shifts as global climate change influences air temperature and rain patterns. We have already seen warmer stream temperatures as air temperatures increase in summer in the Northeastern US. The intensity and duration of floods and droughts are also expected to magnify as future rain patterns shift. This project will evaluate how stream temperature...
Climate change forecasts for eastern salmonids

Climate change forecasts for eastern salmonids

Small streams in forests are likely to see dramatic shifts as global climate change influences air temperature and rain patterns. We have already seen warmer stream temperatures as air temperatures increase in summer in the Northeastern US. The intensity and duration of floods and droughts are also expected to magnify as future rain patterns shift. This project will evaluate how stream temperature...
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Use of next-generation sequencing for the dietary analyses of smallmouth bass (Micropterus dolomieu) stomach content

The USGS Eastern Ecological Science Center scientists are collaborating with the PADEP (SMB) to develop and evaluate a genetic assay for fish diets that will allow us to develop a cost-effective monitoring program for determining the diet of wild fish.
Use of next-generation sequencing for the dietary analyses of smallmouth bass (Micropterus dolomieu) stomach content

Use of next-generation sequencing for the dietary analyses of smallmouth bass (Micropterus dolomieu) stomach content

The USGS Eastern Ecological Science Center scientists are collaborating with the PADEP (SMB) to develop and evaluate a genetic assay for fish diets that will allow us to develop a cost-effective monitoring program for determining the diet of wild fish.
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Ecological flow needs of freshwater mussels

Streamflow characteristics are rapidly changing in response to climate variability, water management practices, and a variety of other human water demands. Alterations in water quantity can have direct impacts on aquatic organisms (e.g., stranding, displacement, disruption of spawning), and can be especially detrimental to organisms with limited mobility. Freshwater mussels are one such group of...
Ecological flow needs of freshwater mussels

Ecological flow needs of freshwater mussels

Streamflow characteristics are rapidly changing in response to climate variability, water management practices, and a variety of other human water demands. Alterations in water quantity can have direct impacts on aquatic organisms (e.g., stranding, displacement, disruption of spawning), and can be especially detrimental to organisms with limited mobility. Freshwater mussels are one such group of...
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Metabarcoding of stomach contents from the Round Goby (Negobius melanostromus) in Pennsylvania

The Round Goby, Neogobius melanostomus, is a small benthic fish native to the Sea of Azov, the Caspian Sea, the Black Sea and the Sea of Marmara.
Metabarcoding of stomach contents from the Round Goby (Negobius melanostromus) in Pennsylvania

Metabarcoding of stomach contents from the Round Goby (Negobius melanostromus) in Pennsylvania

The Round Goby, Neogobius melanostomus, is a small benthic fish native to the Sea of Azov, the Caspian Sea, the Black Sea and the Sea of Marmara.
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Evaluation and Development of Fish Passage Structures and Technologies

Dams can be found in just about every major river, and for good reason. Society has received many benefits like flood control, hydropower, water supply storage, and places to recreate. However, many fish and other life in our rivers can’t swim around these barriers. Often, the best spot for a fish to live and reproduce is out of reach because they can’t pass by a dam. This has not gone unnoticed...
Evaluation and Development of Fish Passage Structures and Technologies

Evaluation and Development of Fish Passage Structures and Technologies

Dams can be found in just about every major river, and for good reason. Society has received many benefits like flood control, hydropower, water supply storage, and places to recreate. However, many fish and other life in our rivers can’t swim around these barriers. Often, the best spot for a fish to live and reproduce is out of reach because they can’t pass by a dam. This has not gone unnoticed...
Learn More
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