occstanhm: Hierarchical occupancy models with correlated error structure
October 31, 2024
This repository contains a R package with 2-level and 3-level occupancy models.
The package also contains a set of tutorials designed to help users understand how to use and code occupancy models in Stan.
The models include a statistical hierarchy that allows for
multi-species modeling and estimating correlations among species.
The models may also be used as a more general "random-effect" type
occupancy model. The models are written in Stan and called through R. The cmdstanr package is used, rather than the more common rstan
package, because features used in Stan were not supported by rstan
at the time of development.
Additionally, cmdstanr allows for quicker performance than rstan.
The package also contains a set of tutorials designed to help users understand how to use and code occupancy models in Stan.
The models include a statistical hierarchy that allows for
multi-species modeling and estimating correlations among species.
The models may also be used as a more general "random-effect" type
occupancy model. The models are written in Stan and called through R. The cmdstanr package is used, rather than the more common rstan
package, because features used in Stan were not supported by rstan
at the time of development.
Additionally, cmdstanr allows for quicker performance than rstan.
Citation Information
Publication Year | 2024 |
---|---|
Title | occstanhm: Hierarchical occupancy models with correlated error structure |
DOI | 10.5066/P13FNZOF |
Authors | Richard A Erickson, Charles J. Labuzzetta |
Product Type | Software Release |
Record Source | USGS Asset Identifier Service (AIS) |
USGS Organization | Upper Midwest Environmental Sciences Center |
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Richard Erickson, PhD
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Charles J Labuzzetta, PhD
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Richard Erickson, PhD
Research Ecologist
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Charles J Labuzzetta, PhD
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Jon Amberg, PhD
Center Director
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