James Cloern (Former Employee)

Multiple indicators (Chl a, C : N ratios, [δ13C]POC, and two classes of lipid biomarker compounds- sterols and phospholipid ester-linked fatty acids) were used to evaluate spatial and temporal variations in the origin of particulate organic matter (POM) in the San Francisco Bay (SFB) estuary. Comparisons were made between the northern and southern subestuaries of SFB, as well as along...

Estuaries are transitional ecosystems at the interface of the terrestrial and marine realms. Their unique physiographic position gives rise to large spatial variability, and to dynamic temporal variability resulting, in part, from a variety of forces and fluxes at the oceanic and terrestrial boundaries. River flow, in particular, is an important mechanism for delivering watershed-derived...

Discrete red patches of water were observed in South San Francisco Bay (USA) on 30 April 1993, and examination of live samples showed that this red tide was caused by surface accumulations of the pigmented ciliate Mesodinium rubrum . Vertical profiles showed strong salinity and temperature stratification in the upper 5 m, peak chlorophyll fluorescence in the upper meter, and differences...

The pilot program described here is motivated by a fundamental principle of the Regional Monitoring Strategy, namely “...the development of data that will provide information on status and trends in the Estuary.” As pointed out in the Strategy, knowledge of status and trends serves two primary purposes: (1) to become aware of or anticipate deleterious conditions in the Estuary, and (2)...

This first annual report of the San Francisco Estuary Regional Monitoring Program contains the results of monitoring measurements made in 1993. Measurements of conventional water quality parameters and trace contaminant concentrations were made at 16 stations throughout the Estuary three times during the year: the wet period (March), during declining Delta outflow (May), and during the...

Coastal ocean waters tend to have very different patterns of phytoplankton biomass variability from the open ocean, and the connections between physical variability and phytoplankton bloom dynamics are less well established for these shallow systems. Predictions of biological responses to physical variability in these environments is inherently difficult because the recurrent seasonal...

Sources and sinks of organic carbon for San Francisco Bay (California, USA) were estimated for 1980. Sources for the southern reach were dominated by phytoplankton and benthic microalgal production. River loading of organic matter was an additional important factor in the northern reach. Tidal marsh export and point sources played a secondary role. Autochthonous production in San...

No abstract available.

This report summarizes the distribution of phytoplankton biomass and selected hydrographic properties in South San Francisco Bay during 1984- 1986. There were a total of 67 cruises during the three-year period with the most frequent sampling occurring during the spring. Parameters measured were chlorophyll a, phaeopigments, in-vivo fluorescence, turbidity, salinity, and temperature.

Phytoplankton cells reside in a turbulent medium partitioned into an upper photic zone that sustains photosynthesis, and a lower aphotic zone that does not. In estuaries, vertical mixing rates between these 2 zones can be rapid ( 1 generation time) because of tidal stirring and because the mixing depth is generally shallow. Moreover, the photic depth is characteristically shallow in...

Vertical fluxes of particulate organic matter were measured with sediment traps above and below the chemocline of Big Soda Lake to define the seasonality of sinking losses from the mixolimnion and determine the effectiveness of the chemocline (pycnocline) as a barrier to the sinking of biogenic particles. Seasonality of sedimentation rates reflected seasonal changes in the community of...

Near simultaneous collection of 34 surface water samples and airborne multispectral scanner data provided input for regression models developed to predict surface concentrations of estuarine chlorophyll a. Two wavelength ratios were employed in model development. The ratios werechosen to capitalize on the spectral characteristics of chlorophyll a, while minimizing atmospheric influences...