Jonathan Q Richmond
Jonathan Richmond is a geneticist at the Western Ecological Research Center.
Science and Products
Threespine Stickleback Trapping Data for Soledad Canyon, Santa Clara River Watershed (2021-2022) Threespine Stickleback Trapping Data for Soledad Canyon, Santa Clara River Watershed (2021-2022)
These data were collected as part of a trapping effort for endangered threespine stickleback in Soledad Canyon, Santa Clara River watershed in California. The two-year survey effort took place in 2021 and 2022. We reported survey reach identities, stream sections, and numbers of fish captured per trapping effort.
Microsatellite genotype scores for a contemporary, range-wide sample of Santa Ana sucker in southern California Microsatellite genotype scores for a contemporary, range-wide sample of Santa Ana sucker in southern California
These data consist of microsatellite genotype scores for all samples of Santa Ana sucker (Catostomus santaanae) used in the study. Scores represent the allele calls for each microsatellite locus (i.e. DNA fragment length containing the microsatellite repeats), with each locus containing two scores representing the two allele copies detected. Included are five tables: Full dataset...
New record of California red-legged frogs (Rana draytonii) in Whitewater Canyon, Riverside County, CA, USA New record of California red-legged frogs (Rana draytonii) in Whitewater Canyon, Riverside County, CA, USA
In February 2017, a population of California red-legged frog Rana draytonii was discovered in the southern foothills of the San Bernardino Mountains of Riverside County, California, near the edge of the species historic distribution. A few days after the first sightings of R. draytonii at the Whitewater Preserve, we conducted a visual daytime search for frogs, tadpoles and egg masses...
Data release for persistence of historical population structure in an endangered species despite near-complete biome conversion in Californias San Joaquin Desert Data release for persistence of historical population structure in an endangered species despite near-complete biome conversion in Californias San Joaquin Desert
The recency of large-scale land conversion in Californias San Joaquin Desert raises the probability that the regions numerous endemic species still retain genetic signatures of historical population connectivity. If so, genomic data can serve as a guidance tool for conserving lands that once supported habitat for gene movement. We studied the genetic structuring of the endangered blunt...
Filter Total Items: 34
Desert ecosystems shape diversification in glossy snakes (genus Arizona) requiring a re-alignment of evolutionary and conservation units Desert ecosystems shape diversification in glossy snakes (genus Arizona) requiring a re-alignment of evolutionary and conservation units
Subspecies are often targets for conservation, yet many lack the genetic data necessary to validate their status as distinctive evolutionary lineages. In 2016, conservationists faced this issue when designating the California glossy snake, Arizona elegans occidentalis, as a Species of Special Concern in California, a decision prompted by population declines and habitat loss but absent of...
Authors
Dustin Wood, Jonathan Q. Richmond, Michael F. Westphal, Bradford D. Hollingsworth, Robert D. Fisher, Amy G. Vandergast
Variation in dietary ecology of two invasive American Bullfrog (Lithobates catesbeianus) populations in Southern California Variation in dietary ecology of two invasive American Bullfrog (Lithobates catesbeianus) populations in Southern California
Invasive American Bullfrogs (Lithobates catesbeianus) are a threat to native species in riparian ecosystems worldwide. They are indiscriminate predators consuming both vertebrate and invertebrate prey, negatively affecting biodiversity. Documenting the diet and feeding ecology of invasive L. catesbeianus can help management agencies identify affected species and facilitate eradication...
Authors
Nathan W. Smith, Ryan J. Hanscom, Jonathan Q. Richmond, Robert N. Fisher, Rulon W. Clark
Effects of temporal hydrologic shifts on the population biology of an endangered freshwater fish in a dryland river ecosystem Effects of temporal hydrologic shifts on the population biology of an endangered freshwater fish in a dryland river ecosystem
Species occupying dryland river ecosystems often experience “boom-and-bust” demographic cycles that coincide with shifts in habitat availability. Knowing whether declines are within natural thresholds versus those caused by acute human disturbance is critical for managing protected species. We investigated temporal shifts in abundance and habitat use of an endangered population of the...
Authors
Jonathan Q. Richmond, Philip Robert Gould, Jennifer Pareti, Andrew Aitken, Eric Morrissette, Adam R. Backlin, Chris Dellith, Robert N. Fisher
Prioritizing the risk and management of introduced species in a landscape with high indigenous biodiversity Prioritizing the risk and management of introduced species in a landscape with high indigenous biodiversity
Risk analysis protocols for prioritizing the management of non-native species are numerous, yet few incorporate risk and management in the same analysis or accommodate a broad diversity of taxa outside of a specific geographic area. We adapted a protocol that accounts for these factors to address non-native animal species in the Southern California/Northern Baja California Coast...
Authors
Jonathan Q. Richmond, Jennifer Kingston, Brittany Ewing, Wendy M Bear, Stacie A. Hathaway, Cedric Lee, Camm C. Swift, Kristine L. Preston, Allison J. Schultz, Barbara E. Kus, Kerwin Russell, Philip Unitt, Bradford D. Hollingsworth, Robert E. Espinoza, Michael Wall, Scott Tremor, Kai Palenscar, Robert N. Fisher
Reference genome of an iconic lizard in western North America, Blainville’s horned lizard Phrynosoma blainvillii Reference genome of an iconic lizard in western North America, Blainville’s horned lizard Phrynosoma blainvillii
Genome assemblies are increasingly being used to identify adaptive genetic variation that can help prioritize the population management of protected species. This approach may be particularly relevant to species like Blainville’s horned lizard, Phrynosoma blainvillii, due to its specialized diet on noxious harvester ants, numerous adaptative traits for avoiding predation (e.g. cranial...
Authors
Jonathan Q. Richmond, Jimmy A. McGuire, Merly Escalona, Mohan P. A. Marimuthu, Oanh Nguyen, Samuel Sacco, Eric Beraut, Erin Toffelmier, Robert N. Fisher, Ian J. Wang, H.B. Shaffer
Skinks of Oceania, New Guinea, and Eastern Wallacea: An underexplored biodiversity hotspot Skinks of Oceania, New Guinea, and Eastern Wallacea: An underexplored biodiversity hotspot
Context: Skinks comprise the dominant component of the terrestrial vertebrate fauna in Oceania, New Guinea, and Eastern Wallacea (ONGEW). However, knowledge of their diversity is incomplete, and their conservation needs are poorly understood. Aims: To explore the diversity and threat status of the skinks of ONGEW and identify knowledge gaps and conservation needs. Methods: We compiled a...
Authors
Alex Slavenko, Allen Allison, Christopher C. Austin, Aaron Bauer, Rafe M. Brown, Robert N. Fisher, Ivan Ineich, Bulisa Iova, Benjamin R. Karin, Frederick Kraus, Sven Mecke, Shai Meiri, Clare Morrison, Paul M. Oliver, Mark O'Shea, Jonathan Q. Richmond, Glenn M. Shea, Oliver J. S. Tallowin, David G. Chapple
Science and Products
Threespine Stickleback Trapping Data for Soledad Canyon, Santa Clara River Watershed (2021-2022) Threespine Stickleback Trapping Data for Soledad Canyon, Santa Clara River Watershed (2021-2022)
These data were collected as part of a trapping effort for endangered threespine stickleback in Soledad Canyon, Santa Clara River watershed in California. The two-year survey effort took place in 2021 and 2022. We reported survey reach identities, stream sections, and numbers of fish captured per trapping effort.
Microsatellite genotype scores for a contemporary, range-wide sample of Santa Ana sucker in southern California Microsatellite genotype scores for a contemporary, range-wide sample of Santa Ana sucker in southern California
These data consist of microsatellite genotype scores for all samples of Santa Ana sucker (Catostomus santaanae) used in the study. Scores represent the allele calls for each microsatellite locus (i.e. DNA fragment length containing the microsatellite repeats), with each locus containing two scores representing the two allele copies detected. Included are five tables: Full dataset...
New record of California red-legged frogs (Rana draytonii) in Whitewater Canyon, Riverside County, CA, USA New record of California red-legged frogs (Rana draytonii) in Whitewater Canyon, Riverside County, CA, USA
In February 2017, a population of California red-legged frog Rana draytonii was discovered in the southern foothills of the San Bernardino Mountains of Riverside County, California, near the edge of the species historic distribution. A few days after the first sightings of R. draytonii at the Whitewater Preserve, we conducted a visual daytime search for frogs, tadpoles and egg masses...
Data release for persistence of historical population structure in an endangered species despite near-complete biome conversion in Californias San Joaquin Desert Data release for persistence of historical population structure in an endangered species despite near-complete biome conversion in Californias San Joaquin Desert
The recency of large-scale land conversion in Californias San Joaquin Desert raises the probability that the regions numerous endemic species still retain genetic signatures of historical population connectivity. If so, genomic data can serve as a guidance tool for conserving lands that once supported habitat for gene movement. We studied the genetic structuring of the endangered blunt...
Filter Total Items: 34
Desert ecosystems shape diversification in glossy snakes (genus Arizona) requiring a re-alignment of evolutionary and conservation units Desert ecosystems shape diversification in glossy snakes (genus Arizona) requiring a re-alignment of evolutionary and conservation units
Subspecies are often targets for conservation, yet many lack the genetic data necessary to validate their status as distinctive evolutionary lineages. In 2016, conservationists faced this issue when designating the California glossy snake, Arizona elegans occidentalis, as a Species of Special Concern in California, a decision prompted by population declines and habitat loss but absent of...
Authors
Dustin Wood, Jonathan Q. Richmond, Michael F. Westphal, Bradford D. Hollingsworth, Robert D. Fisher, Amy G. Vandergast
Variation in dietary ecology of two invasive American Bullfrog (Lithobates catesbeianus) populations in Southern California Variation in dietary ecology of two invasive American Bullfrog (Lithobates catesbeianus) populations in Southern California
Invasive American Bullfrogs (Lithobates catesbeianus) are a threat to native species in riparian ecosystems worldwide. They are indiscriminate predators consuming both vertebrate and invertebrate prey, negatively affecting biodiversity. Documenting the diet and feeding ecology of invasive L. catesbeianus can help management agencies identify affected species and facilitate eradication...
Authors
Nathan W. Smith, Ryan J. Hanscom, Jonathan Q. Richmond, Robert N. Fisher, Rulon W. Clark
Effects of temporal hydrologic shifts on the population biology of an endangered freshwater fish in a dryland river ecosystem Effects of temporal hydrologic shifts on the population biology of an endangered freshwater fish in a dryland river ecosystem
Species occupying dryland river ecosystems often experience “boom-and-bust” demographic cycles that coincide with shifts in habitat availability. Knowing whether declines are within natural thresholds versus those caused by acute human disturbance is critical for managing protected species. We investigated temporal shifts in abundance and habitat use of an endangered population of the...
Authors
Jonathan Q. Richmond, Philip Robert Gould, Jennifer Pareti, Andrew Aitken, Eric Morrissette, Adam R. Backlin, Chris Dellith, Robert N. Fisher
Prioritizing the risk and management of introduced species in a landscape with high indigenous biodiversity Prioritizing the risk and management of introduced species in a landscape with high indigenous biodiversity
Risk analysis protocols for prioritizing the management of non-native species are numerous, yet few incorporate risk and management in the same analysis or accommodate a broad diversity of taxa outside of a specific geographic area. We adapted a protocol that accounts for these factors to address non-native animal species in the Southern California/Northern Baja California Coast...
Authors
Jonathan Q. Richmond, Jennifer Kingston, Brittany Ewing, Wendy M Bear, Stacie A. Hathaway, Cedric Lee, Camm C. Swift, Kristine L. Preston, Allison J. Schultz, Barbara E. Kus, Kerwin Russell, Philip Unitt, Bradford D. Hollingsworth, Robert E. Espinoza, Michael Wall, Scott Tremor, Kai Palenscar, Robert N. Fisher
Reference genome of an iconic lizard in western North America, Blainville’s horned lizard Phrynosoma blainvillii Reference genome of an iconic lizard in western North America, Blainville’s horned lizard Phrynosoma blainvillii
Genome assemblies are increasingly being used to identify adaptive genetic variation that can help prioritize the population management of protected species. This approach may be particularly relevant to species like Blainville’s horned lizard, Phrynosoma blainvillii, due to its specialized diet on noxious harvester ants, numerous adaptative traits for avoiding predation (e.g. cranial...
Authors
Jonathan Q. Richmond, Jimmy A. McGuire, Merly Escalona, Mohan P. A. Marimuthu, Oanh Nguyen, Samuel Sacco, Eric Beraut, Erin Toffelmier, Robert N. Fisher, Ian J. Wang, H.B. Shaffer
Skinks of Oceania, New Guinea, and Eastern Wallacea: An underexplored biodiversity hotspot Skinks of Oceania, New Guinea, and Eastern Wallacea: An underexplored biodiversity hotspot
Context: Skinks comprise the dominant component of the terrestrial vertebrate fauna in Oceania, New Guinea, and Eastern Wallacea (ONGEW). However, knowledge of their diversity is incomplete, and their conservation needs are poorly understood. Aims: To explore the diversity and threat status of the skinks of ONGEW and identify knowledge gaps and conservation needs. Methods: We compiled a...
Authors
Alex Slavenko, Allen Allison, Christopher C. Austin, Aaron Bauer, Rafe M. Brown, Robert N. Fisher, Ivan Ineich, Bulisa Iova, Benjamin R. Karin, Frederick Kraus, Sven Mecke, Shai Meiri, Clare Morrison, Paul M. Oliver, Mark O'Shea, Jonathan Q. Richmond, Glenn M. Shea, Oliver J. S. Tallowin, David G. Chapple