Software
Explore software related to research areas and staff members at the USGS Alaska Science Center.
Filter Total Items: 31
Code for analysis of polar bear maternal den abundance and distribution in four regions of northern Alaska and Canada within the Southern Beaufort Sea subpopulation boundary (1982-2015) Code for analysis of polar bear maternal den abundance and distribution in four regions of northern Alaska and Canada within the Southern Beaufort Sea subpopulation boundary (1982-2015)
We have archived the derived data files and R/JAGS code for our analysis as a U.S. Geological Survey data release (link ). The code is divided into three R scripts: 1) pbdens_landdens_JWM.r contains R code for fitting hierarchical Bayesian models of polar bear maternal den abundance and distribution for the Southern Beaufort Sea (SBS) subpopulation, 1982-2015. This script requires the...
Nest Survival Bias Analysis Nest Survival Bias Analysis
This R script will run one replicate of one scenario used by Weiser (in review) to quantify biases in estimates of nest survival when nests are not found at the beginning of the nesting interval (age 0). The script simulates nest monitoring histories based on input parameters, applies models with or without an age effect to estimate daily survival rates, and calculates nest survival (to...
Arctic Shorebird Population Model Arctic Shorebird Population Model
This R script will run one example of the stochastic matrix models run by Weiser et al. (2020) to simulate shorebird populations. The model predicts population growth rates and elasticity values of vital rates. The example script is stand-alone and contains input values for one example species; input values for the other species are provided in the manuscript.
USGS ISO Content Specifications USGS ISO Content Specifications
A repository for USGS ISO metadata content specifications. Content specifications define documentation requirements for various USGS data and software products. These specs are used to guide authors in developing robust standardized metadata using the ISO 19115 suite of metadata standards. The repository is used for development, testing and implementation of content spec modules. It...
Python Scripts for Bioinformatics Python Scripts for Bioinformatics
Bioinformatics software repository containing python scripts intended for search and download of genetic information obtained from GenBank NCBI genetics data resources in support of developing PCR primers, targeted genetic databases, genetic analyses, and data interpretation. Includes multiple functions to streamline this process.
R script for email delivery of sea ice imagery and charts to users with limited bandwidth R script for email delivery of sea ice imagery and charts to users with limited bandwidth
This software package represents an effort to enable access of sea ice charts and imagery in support of daily logistics planning where internet bandwidth and geoprocessing abilities are limited. The script acquires, processes and delivers these data in a format that may be manipulated by openly available virtual globe software, be visualized by software commonly installed on all smart...
qfasar: Quantitative Fatty Acid Signature Analysis in R qfasar: Quantitative Fatty Acid Signature Analysis in R
Knowledge of predator diets provides numerous insights into their ecology. Diet estimation therefore remains an active area of research in quantitative ecology. Quantitative Fatty Acid Signature Analysis (QFASA) is a method of estimating the diet composition of predators. The fundamental unit of information in QFASA is a fatty acid signature (signature), which is a vector of proportions...