Software

This code set is an R workflow for phenological date matching to provide an open-source solution for projects with limited funding to allow users to calculate Normalized Difference Vegetation Index (NDVI) from sentinel-2 imagery dates specified by a user supplied date raster (phenology raster) for mapping and forecasting geographic distributions of invasive plant species at large spatial...

An introduction to version control for novices using Git and a guide for publishing USGS code. Please see https://cdi.code-pages.usgs.gov/usgs-git-and-software-release-course/ for a rendered version of this material.

Github repository that contains python code workflows for generating 3-dimensional images of topography, hydrography, and other remote sensing data with Blender, an open-source visualization software.

An R shiny application to organize and streamline the process of regression model development using time series data. An interactive browser interface allows users to evaluate potential variables, compare models, and output summary documents compiling descriptive graphs and statistics for archival purposes. The application allows for the processing of left-censored response variables...

RUSH is a tool for rapid repeat high resolution coastal vegetation maps to improve forecasting of hurricane impacts and coastal resilience. Natural coastal vegetated ecosystems, including tidal marshes, vegetated dunes, and shrub- and forest-dominated wetlands, provide nature-based solutions to climate-related impacts of hurricanes. Extensive research has shown that vegetation cover in...

This Python package is intended to assist with summarization of landscape information to stream watershed drainages (local summaries). Methods are built in a generalized way and are intended to support efforts for any stream network having polygon based drainage watersheds. The output of these methods can be used to calculate stream network summaries using xstrm.

MTH5 is an exchangeable and archivable format for magnetotelluric time series to better serve the community through FAIR principles. MTH5 is an HDF5 data container for magnetotelluric time series data, but could be extended to other data types. This open-source Python package provides tools for reading/writing/manipulating MTH5 files.

An open-source Python package to make reading/writing/editing magnetotelluric metadata easier.

This package provides functions and workflows for standardizing geophysical datasets based on the NetCDF file format. The current implementation supports both time and frequency domain electromagnetic data, raw and processed, 1-D inverted models along flight lines, and 2-D/3-D gridded layers.

Tools for interacting with U.S. Geological Survey ScienceBase https://www.sciencebase.gov interfaces. ScienceBase is a data cataloging and collaborative data management platform. Functions included for querying ScienceBase, and creating and fetching datasets.

This tool is being provided free to the public in support of GIS specialists who calculate summary information.

Python package to assist with stream network summarization. This package is intended to support efforts for any stream network having general topology (i.e. to/from nodes). Specifically this package was built to support fisheries based analyses using multiple versions of the National Hydrography Database Plus (NHDPlus) representing streams within the United States along with HydroBasins...