Software

FishScale estimates fish lengths, numeric abundance, and biomass density in underwater still images. This software package is further described in a journal article by Esselman et al. (in revision; Methods in Ecology and Evolution) entitled "A transferable approach for quantifying benthic fish sizes and densities in annotated underwater images". FishScale uses binary masks obtained from...

This repository holds the code to reproduce the data analyses and figures found in "Differences in Rhizosphere Microbial Communities Between Native and Non-Native Phragmites australis May Depend on Stand Density" published in Ecology and Evolution written by Wesley A. Bickford, Donald R. Zak, Kurt P. Kowalski, and Deborah E. Goldberg.

The Phragmites Adaptive Management Framework (PAMF) is an adaptive management program created to improve the efficacy and efficiency of Phragmites management efforts throughout the Great Lakes region. Managers enroll Phragmites stands, report the management techniques they used, and monitor the invasion status of Phragmites on their site (management unit - MU). Through a systematic...