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Publications

This is a list of publications written by Patuxent employees since Patuxent opened in 1939.  To search for Patuxent's publications by author or title, please click below to go to the USGS Publication Warehouse.

Filter Total Items: 8128

Tumor prevalence and biomarkers of genotoxicity in brown bullhead (Ameiurus nebulosus) in Chesapeake Bay tributaries Tumor prevalence and biomarkers of genotoxicity in brown bullhead (Ameiurus nebulosus) in Chesapeake Bay tributaries

We surveyed four Chesapeake Bay tributaries for skin and liver tumors in brown bullhead (Ameiurus nebulosus). We focused on the South River, where the highest skin tumor prevalence (53%) in the Bay watershed had been reported. The objectives were to 1) compare tumor prevalence with nearby rivers (Severn and Rhode) and a more remote river (Choptank); 2) investigate associations between...
Authors
Alfred E. Pinkney, John C. Harshbarger, Natalie K. Karouna-Renier, Kathryn Jenko, Lennart Balk, Halldora Skarphedinsdottir, Birgitta Liewenborg, Michael A. Rutter

Estimating detection and density of the Andean cat in the high Andes Estimating detection and density of the Andean cat in the high Andes

The Andean cat (Leopardus jacobita) is one of the most endangered, yet least known, felids. Although the Andean cat is considered at risk of extinction, rigorous quantitative population studies are lacking. Because physical observations of the Andean cat are difficult to make in the wild, we used a camera-trapping array to photo-capture individuals. The survey was conducted in...
Authors
Juan Reppucci, Beth Gardner, Mauro Lucherini

Recreation impacts to cliff resources in the Potomac Gorge: Final report, June 2011 Recreation impacts to cliff resources in the Potomac Gorge: Final report, June 2011

Managers of the National Park Service (NPS) are directed by law to accommodate appropriate types and amounts of visitation while ensuring that: any adverse impacts are the minimum necessary, unavoidable, cannot be further mitigated, and do not constitute impairment or derogation of park resources and values. (NPS 2006). The increasing popularity of the national park system presents...
Authors
Jeffrey L. Marion, C. Carr, C.A. Davis

Informal and formal trail monitoring protocols and baseline conditions: Acadia National Park Informal and formal trail monitoring protocols and baseline conditions: Acadia National Park

At Acadia National Park, changing visitor use levels and patterns have contributed to an increasing degree of visitor use impacts to natural and cultural resources. To better understand the extent and severity of these resource impacts and identify effective management techniques, the park sponsored this research to develop monitoring protocols, collect baseline data, and identify...
Authors
Jeffrey L. Marion, Jeremy F. Wimpey, L. Park

Conservation in the face of climate change: The roles of alternative models, monitoring, and adaptation in confronting and reducing uncertainty Conservation in the face of climate change: The roles of alternative models, monitoring, and adaptation in confronting and reducing uncertainty

The broad physical and biological principles behind climate change and its potential large scale ecological impacts on biota are fairly well understood, although likely responses of biotic communities at fine spatio-temporal scales are not, limiting the ability of conservation programs to respond effectively to climate change outside the range of human experience. Much of the climate...
Authors
M.J. Conroy, Michael C. Runge, James D. Nichols, K.W. Stodola, R.J. Cooper

Inference for occupancy and occupancy dynamics Inference for occupancy and occupancy dynamics

This chapter deals with the estimation of occupancy as a state variable to assess the status of, and track changes in, species distributions when sampling with camera traps. Much of the recent interest in occupancy estimation and modeling originated from the models developed by MacKenzie et al. (2002, 2003), although similar methods were developed independently (Azuma et al. 1990; Bayley...
Authors
Allan F. O’Connell, Larissa L. Bailey

An introduction to adaptive management for threatened and endangered species An introduction to adaptive management for threatened and endangered species

Management of threatened and endangered species would seem to be a perfect context for adaptive management. Many of the decisions are recurrent and plagued by uncertainty, exactly the conditions that warrant an adaptive approach. But although the potential of adaptive management in these settings has been extolled, there are limited applications in practice. The impediments to practical
Authors
Michael C. Runge

Book review: Bayesian analysis for population ecology Book review: Bayesian analysis for population ecology

Brian Dennis described the field of ecology as “fertile, uncolonized ground for Bayesian ideas.” He continued: “The Bayesian propagule has arrived at the shore. Ecologists need to think long and hard about the consequences of a Bayesian ecology. The Bayesian outlook is a successful competitor, but is it a weed? I think so.” (Dennis 2004) Review info: Bayesian Analysis for Population...
Authors
William A. Link

Innate immunity is not related to the sex of adult Tree Swallows during the nestling period Innate immunity is not related to the sex of adult Tree Swallows during the nestling period

Evolutionary theory predicts that exposure to more diverse pathogens will result in the evolution of a more robust immune response. We predicted that during the breeding season the innate immune function of female Tree Swallows (Tachycineta bicolor) should be more effective than that of males because (1) the transmission of sexually transmitted microbes during copulation puts females at...
Authors
Bradley J. Houdek, Michael P. Lombardo, Patrick A. Thorpe, D. Caldwell Hahn

Wild bird migration across the Qinghai-Tibetan Plateau: A transmission route for highly pathogenic H5N1 Wild bird migration across the Qinghai-Tibetan Plateau: A transmission route for highly pathogenic H5N1

Background Qinghai Lake in central China has been at the center of debate on whether wild birds play a role in circulation of highly pathogenic avian influenza virus H5N1. In 2005, an unprecedented epizootic at Qinghai Lake killed more than 6000 migratory birds including over 3000 bar-headed geese (Anser indicus). H5N1 subsequently spread to Europe and Africa, and in following years has...
Authors
Diann J. Prosser, Peng Cui, John Y. Takekawa, Mingjie Tang, Yuansheng Hou, Bridget M. Collins, Baoping Yan, Nichola J. Hill, Tianxian Li, Yongdong Li, Fumin Lei, Shan Guo, Zhi Xing, Yubang He, Yuanchun Zhou, David C. Douglas, William M. Perry, Scott H. Newman

Targeted surveillance for highly pathogenic avian influenza in migratory waterfowl across the conterminous United States: chapter 12 Targeted surveillance for highly pathogenic avian influenza in migratory waterfowl across the conterminous United States: chapter 12

Introduction of Asian strain H5N1 Highly Pathogenic avian influenca via waterfowl migration is one potential route of entry into the United States. In conjunction with state, tribe, and laboratory partners, the United States Department of Agriculture collected and tested 124,603 wild bird samples in 2006 as part of a national surveillance effort. A sampling plan was devised to increase...
Authors
Matthew L. Farnsworth, William L. Kendall, Paul F. Doherty, Ryan S. Miller, Gary C. White, James D. Nichols, Kenneth P. Burnham, Alan B. Franklin
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