Publications
This is a list of publications written by Patuxent employees since Patuxent opened in 1939. To search for Patuxent's publications by author or title, please click below to go to the USGS Publication Warehouse.
Filter Total Items: 8128
Value of information analysis as a decision support tool for biosecurity Value of information analysis as a decision support tool for biosecurity
This chapter demonstrates the economic concept of ‘value of information’(VOI), and how biosecurity managers can use VOI analysis to decide whether or not to reduce uncertainty by collecting additional information through monitoring, experimentation, or some other form of research. We first explore how some uncertainties may be scientifically interesting to resolve, but ultimately...
Authors
Michael C. Runge, Tracy Rout, Daniel Spring, Terry Walshe
Evolutionary dynamics of an expressed MHC class IIβ locus in the Ranidae (Anura) uncovered by genome walking and high-throughput amplicon sequencing Evolutionary dynamics of an expressed MHC class IIβ locus in the Ranidae (Anura) uncovered by genome walking and high-throughput amplicon sequencing
The Major Histocompatibility Complex (MHC) is a genomic region encoding immune loci that are important and frequently used markers in studies of adaptive genetic variation and disease resistance. Given the primary role of infectious diseases in contributing to global amphibian declines, we characterized the hypervariable exon 2 and flanking introns of the MHC Class IIβ chain for 17...
Authors
Kevin P. Mulder, Maria Cortazar-Chinarro, D. James Harris, Angelica Crottini, Evan H. Campbell Grant, Robert C. Fleischer, Anna E. Savage
Atypical feeding behavior of Long-tailed Ducks in the wake of a commercial fishing boat while clamming Atypical feeding behavior of Long-tailed Ducks in the wake of a commercial fishing boat while clamming
A foraging group of Clangula hyemalis (Long-tailed Duck) was observed on 10 February 2010 diving behind a commercial boat that was clamming near Monomoy Island, Nantucket Sound, MA. We used a shotgun to collect 9 of the ducks, and our analyses of gizzard and gullet (esophagus and proventriculus) revealed 37 food items in the gizzard and 16 in the gullet. Mollusca were the dominant food...
Authors
Matthew Perry, Peter C. Osenton, Timothy P. White
Allowable take of a population of red-winged blackbirds in the northern Great Plains Allowable take of a population of red-winged blackbirds in the northern Great Plains
Red-winged blackbirds (Agelaius phoeniceus) are protected under the Migratory Bird Treaty Act (MBTA), which has provisions against take. Blackbirds may be taken legally without a Federal permit, however, under an existing Depredation Order (50 CFR 21.43), which allows for take of blackbirds that are in the process of doing, or about to do, agricultural damage. Modeling the effect of take...
Authors
Michael C. Runge, John R. Sauer
Fifty-eighth supplement to the American Ornithologists' Union: Check-list of North American Birds Fifty-eighth supplement to the American Ornithologists' Union: Check-list of North American Birds
This is the 17th supplement since publication of the 7th edition of the Check-list of North American Birds (American Ornithologists' Union [AOU] 1998). It summarizes decisions made between April 15, 2016, and April 15, 2017, by the AOS's Committee on Classification and Nomenclature—North and Middle America. The Committee has continued to operate in the manner outlined in the 42nd...
Authors
Terry Chesser, Kevin J Burns, Carla Cicero, Jon L. Dunn, Andrew W. Kratter, Irby J. Lovette, Pamela C. Rasmussen, J.V. Remsen, James D. Rising, Douglas F. Stotz, Kevin Winker
Acquisition of Borrelia burgdorferi infection by larval Ixodes scapularis (Acari: Ixodidae) associated with engorgement measures Acquisition of Borrelia burgdorferi infection by larval Ixodes scapularis (Acari: Ixodidae) associated with engorgement measures
Measuring rates of acquisition of the Lyme disease pathogen, Borrelia burgdorferi sensu lato Johnson, Schmid, Hyde, Steigerwalt & Brenner, by the larval stage of Ixodes scapularis Say is a useful tool for xenodiagnoses of B. burgdorferi in vertebrate hosts. In the nymphal and adult stages of I. scapularis, the duration of attachment to hosts has been shown to predict both body...
Authors
Janelle Couret, M.C. Dyer, T.N. Mather, S. Han, J.I. Tsao, R.A. LeBrun, Howard S. Ginsberg
Two-step adaptive management for choosing between two management actions Two-step adaptive management for choosing between two management actions
Adaptive management is widely advocated to improve environmental management. Derivations of optimal strategies for adaptive management, however, tend to be case specific and time consuming. In contrast, managers might seek relatively simple guidance, such as insight into when a new potential management action should be considered, and how much effort should be expended on trialing such...
Authors
Alana L. Moore, Leila Walker, Michael C. Runge, Eve McDonald-Madden, Michael A McCarthy
Essential information: Uncertainty and optimal control of Ebola outbreaks Essential information: Uncertainty and optimal control of Ebola outbreaks
Early resolution of uncertainty during an epidemic outbreak can lead to rapid and efficient decision making, provided that the uncertainty affects prioritization of actions. The wide range in caseload projections for the 2014 Ebola outbreak caused great concern and debate about the utility of models. By coding and running 37 published Ebola models with five candidate interventions, we...
Authors
Shou-Li Li, Ottar Bjornstad, Matthew J. Ferrari, Riley Mummah, Michael C. Runge, Christopher J. Fonnesbeck, Michael J. Tildesley, William J. M. Probert, Katriona Shea
Integrating count and detection–nondetection data to model population dynamics Integrating count and detection–nondetection data to model population dynamics
There is increasing need for methods that integrate multiple data types into a single analytical framework as the spatial and temporal scale of ecological research expands. Current work on this topic primarily focuses on combining capture–recapture data from marked individuals with other data types into integrated population models. Yet, studies of species distributions and trends often...
Authors
Elise F. Zipkin, Sam Rossman, Charles B. Yackulic, David Wiens, James T. Thorson, Raymond J. Davis, Evan H. Campbell Grant
Expanding the North American Breeding Bird Survey analysis to include additional species and regions Expanding the North American Breeding Bird Survey analysis to include additional species and regions
The North American Breeding Bird Survey (BBS) contains data for >700 bird species, but analyses often focus on a core group of ∼420 species. We analyzed data for 122 species of North American birds for which data exist in the North American Breeding Bird Survey (BBS) database but are not routinely analyzed on the BBS Summary and Analysis Website. Many of these species occur in the...
Authors
John R. Sauer, Daniel Niven, Keith L. Pardieck, David Ziolkowski, William A. Link
Model-based approaches to deal with detectability: a comment on Hutto (2016) Model-based approaches to deal with detectability: a comment on Hutto (2016)
In a recent paper, Hutto (2016a) challenges the need to account for detectability when interpreting data from point counts. A number of issues with model-based approaches to deal with detectability are presented, and an alternative suggested: surveying an area around each point over which detectability is assumed certain. The article contains a number of false claims and errors of logic...
Authors
Tiago A. Marques, Len Thomas, Marc Kery, Steve T. Buckland, David L. Borchers, Eric Rexstad, Rachel M. Fewster, Darryl I. MacKenzie, Andy Royle, Gurutzeta Guillera-Arroita, Colleen M. Handel, David C. Pavlacky, Richard J. Camp
Vegetation recovery in tidal marshes reveals critical slowing down under increased inundation Vegetation recovery in tidal marshes reveals critical slowing down under increased inundation
A declining rate of recovery following disturbance has been proposed as an important early warning for impending tipping points in complex systems. Despite extensive theoretical and laboratory studies, this ‘critical slowing down’ remains largely untested in the complex settings of real-world ecosystems. Here, we provide both observational and experimental support of critical slowing...
Authors
Jim van Belzen, Johan van de Koppel, Matthew L. Kirwan, Daphne van der Wal, Peter M. J. Herman, Vasilis Dakos, Sonia Kefi, Marten Scheffer, Glenn R. Guntenspergen, Tjeerd J. Bouma